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    Ankhd1 ankyrin repeat and KH domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 108857, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ankhd1provided by MGI
    Official Full Name
    ankyrin repeat and KH domain containing 1provided by MGI
    Primary source
    MGI:MGI:1921733
    See related
    Ensembl:ENSMUSG00000024483
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Mask; AA571404; mFLJ00246; mKIAA1085; 1110004O12Rik; 4933432B13Rik; 9130019P20Rik; A530027J04Rik; A630021B20Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 13.2), limb E14.5 (RPKM 11.3) and 28 other tissues See more

    Genomic context

    See Ankhd1 in Genome Data Viewer
    Location:
    18; 18 B2
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 18 NC_000084.6 (36560603..36658908)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (36720257..36818562)

    Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 41698 Neighboring gene solute carrier family 4, sodium bicarbonate cotransporter, member 9 Neighboring gene proteasome (prosome, macropain) subunit, alpha type 4 pseudogene Neighboring gene eukaryotic translation initiation factor 4E binding protein 3 Neighboring gene steroid receptor RNA activator 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Readthrough Maskbp3

    Readthrough gene: Maskbp3, Included gene: Eif4ebp3

    Homology

    Clone Names

    • FLJ00246

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    innate immune response IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    ankyrin repeat and KH domain-containing protein 1
    Names
    multiple ankyrin repeats, single KH-domain homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_175375.3NP_780584.2  ankyrin repeat and KH domain-containing protein 1

      Status: VALIDATED

      Source sequence(s)
      AC115631, AK029322, AK042754, BC091647, BG804884, CD538664, CF742822, CJ165547
      Consensus CDS
      CCDS50256.1
      UniProtKB/TrEMBL
      E9PUR0, Q5BJ28, Q8BXZ6, Q8C103
      Related
      ENSMUSP00000123270.2, ENSMUST00000155329.8
      Conserved Domains (7) summary
      cd00105
      Location:16961758
      KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
      cd00204
      Location:370494
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam05672
      Location:783870
      MAP7; MAP7 (E-MAP-115) family
      pfam12796
      Location:279368
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:377428
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:409438
      ANK; ANK repeat [structural motif]
      cl09111
      Location:817855
      Prefoldin; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000084.6 Reference GRCm38.p4 C57BL/6J

      Range
      36560603..36658908
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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