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    LOC107984893 uncharacterized LOC107984893 [ Homo sapiens (human) ]

    Gene ID: 107984893, updated on 10-Dec-2024

    Summary

    Gene symbol
    LOC107984893
    Gene description
    uncharacterized LOC107984893
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LOC107984893 in Genome Data Viewer
    Location:
    16p12.3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (17861090..17972501, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (17868055..17979741, complement)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene xylosyltransferase 1 Neighboring gene uncharacterized LOC107987234 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10509 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10510 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10511 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10512 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:17564811-17565312 Neighboring gene uncharacterized LOC105371106 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr16:17591055-17591654 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10513 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:17665142-17666341 Neighboring gene NANOG hESC enhancer GRCh37_chr16:17672718-17673219 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr16:17700860-17702059 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:17838498-17839174 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:17839175-17839850 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:17840527-17841202 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr16:17851169-17851784 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr16:17851785-17852400 Neighboring gene H3K27ac hESC enhancer GRCh37_chr16:17870498-17870998 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr16:17930405-17931604 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10514 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10515 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10516 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 10517 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:18065894-18066422 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:18066423-18066951 Neighboring gene ribosomal protein L7 pseudogene 47 Neighboring gene uncharacterized LOC105371108 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:18220583-18221084 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr16:18221085-18221584 Neighboring gene geminin, DNA replication inhibitor pseudogene 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      17861090..17972501 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_001752093.2 RNA Sequence

    2. XR_001752092.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      17868055..17979741 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007086933.1 RNA Sequence

    2. XR_007086932.1 RNA Sequence