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    Pom121 nuclear pore membrane protein 121 [ Mus musculus (house mouse) ]

    Gene ID: 107939, updated on 23-Jun-2021

    Summary

    Official Symbol
    Pom121provided by MGI
    Official Full Name
    nuclear pore membrane protein 121provided by MGI
    Primary source
    MGI:MGI:2137624
    See related
    Ensembl:ENSMUSG00000053293
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    C80273; mKIAA0618; 2610027A18Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 46.8), thymus adult (RPKM 22.0) and 27 other tissues See more
    Orthologs
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    Genomic context

    See Pom121 in Genome Data Viewer
    Location:
    5; 5 G2
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (135404994..135433587, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (135376140..135404841, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (135852010..135870416, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene FK506 binding protein 6 Neighboring gene tripartite motif-containing 50 Neighboring gene NOL1/NOP2/Sun domain family, member 5 Neighboring gene microRNA 7033 Neighboring gene huntingtin interacting protein 1 Neighboring gene predicted gene, 52790 Neighboring gene chemokine (C-C motif) ligand 26

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables nuclear localization sequence binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables structural constituent of nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables structural constituent of nuclear pore ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in RNA export from nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within mRNA transport IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in nuclear pore organization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein import into nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
     
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nuclear membrane ISO
    Inferred from Sequence Orthology
    more info
     
    part_of nuclear pore IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of nuclear pore ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    nuclear envelope pore membrane protein POM 121
    Names
    nucleoporin Nup121
    pore membrane protein of 121 kDa

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_148932.2NP_683734.2  nuclear envelope pore membrane protein POM 121

      See identical proteins and their annotated locations for NP_683734.2

      Status: VALIDATED

      Source sequence(s)
      AC024608, BC053101, CF545814, CJ306468, W44309
      Consensus CDS
      CCDS51662.1
      UniProtKB/Swiss-Prot
      Q8K3Z9
      UniProtKB/TrEMBL
      Q3U425
      Related
      ENSMUSP00000106801.3, ENSMUST00000111171.6
      Conserved Domains (1) summary
      pfam15229
      Location:292527
      POM121; POM121 family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      135404994..135433587 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006504334.4XP_006504397.1  nuclear envelope pore membrane protein POM 121 isoform X1

      Conserved Domains (3) summary
      PHA03247
      Location:182467
      PHA03247; large tegument protein UL36; Provisional
      PTZ00473
      Location:829930
      PTZ00473; Plasmodium Vir superfamily; Provisional
      pfam15229
      Location:52287
      POM121; POM121 family
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