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    Scamp1 secretory carrier membrane protein 1 [ Mus musculus (house mouse) ]

    Gene ID: 107767, updated on 9-Sep-2018

    Summary

    Official Symbol
    Scamp1provided by MGI
    Official Full Name
    secretory carrier membrane protein 1provided by MGI
    Primary source
    MGI:MGI:1349480
    See related
    Ensembl:ENSMUSG00000021687 Vega:OTTMUSG00000033839
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI415563; AW122395; 4930505M11Rik
    Expression
    Broad expression in frontal lobe adult (RPKM 34.4), CNS E18 (RPKM 30.4) and 26 other tissues See more
    Orthologs

    Genomic context

    See Scamp1 in Genome Data Viewer
    Location:
    13; 13 C3
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (94201433..94285826, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (94971388..95055236, complement)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene cytochrome c, pseudogene 3 Neighboring gene lipoma HMGIC fusion partner-like 2 Neighboring gene predicted gene, 32089 Neighboring gene nucleoside diphosphate kinase B pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein domain specific binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    endocytosis ISO
    Inferred from Sequence Orthology
    more info
     
    exocytosis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein transport ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Golgi membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    clathrin-coated vesicle ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasmic vesicle membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    endosome IEA
    Inferred from Electronic Annotation
    more info
     
    integral component of membrane ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of synaptic vesicle membrane ISO
    Inferred from Sequence Orthology
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    recycling endosome membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    recycling endosome membrane ISO
    Inferred from Sequence Orthology
    more info
     
    synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    synaptic vesicle TAS
    Traceable Author Statement
    more info
    PubMed 
    synaptic vesicle membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    trans-Golgi network ISO
    Inferred from Sequence Orthology
    more info
     
    trans-Golgi network membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    zymogen granule membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    secretory carrier-associated membrane protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001346609.1NP_001333538.1  secretory carrier-associated membrane protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC148334, AK135058, AK162168
      Consensus CDS
      CCDS84049.1
      UniProtKB/TrEMBL
      Q3TSA8, Q3UY11
      Conserved Domains (2) summary
      pfam04144
      Location:65240
      SCAMP; SCAMP family
      cl03075
      Location:1363
      GrpE; nucleotide exchange factor GrpE
    2. NM_029153.1NP_083429.1  secretory carrier-associated membrane protein 1 isoform 1

      See identical proteins and their annotated locations for NP_083429.1

      Status: VALIDATED

      Source sequence(s)
      BC034283
      Consensus CDS
      CCDS36750.1
      UniProtKB/Swiss-Prot
      Q8K021
      UniProtKB/TrEMBL
      Q3TD71
      Related
      ENSMUSP00000022197.8, OTTMUSP00000046039, ENSMUST00000022197.14, OTTMUST00000085257
      Conserved Domains (1) summary
      pfam04144
      Location:117292
      SCAMP; SCAMP family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      94201433..94285826 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006517514.1XP_006517577.1  secretory carrier-associated membrane protein 1 isoform X1

      Related
      ENSMUSP00000123135.1, OTTMUSP00000046040, ENSMUST00000152555.7, OTTMUST00000085258
      Conserved Domains (2) summary
      pfam04144
      Location:65240
      SCAMP; SCAMP family
      cl03075
      Location:1363
      GrpE; nucleotide exchange factor GrpE
    2. XM_006517515.2XP_006517578.1  secretory carrier-associated membrane protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006517578.1

      UniProtKB/TrEMBL
      Q3TSA8
      Related
      ENSMUSP00000120053.1, OTTMUSP00000046041, ENSMUST00000153558.7, OTTMUST00000085259
      Conserved Domains (2) summary
      pfam04144
      Location:65240
      SCAMP; SCAMP family
      cl03075
      Location:1363
      GrpE; nucleotide exchange factor GrpE
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