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    Brms1 breast cancer metastasis-suppressor 1 [ Mus musculus (house mouse) ]

    Gene ID: 107392, updated on 23-Jun-2021

    Summary

    Official Symbol
    Brms1provided by MGI
    Official Full Name
    breast cancer metastasis-suppressor 1provided by MGI
    Primary source
    MGI:MGI:2388804
    See related
    Ensembl:ENSMUSG00000080268
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AV003220; AW554636
    Expression
    Ubiquitous expression in testis adult (RPKM 61.2), stomach adult (RPKM 31.2) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Brms1 in Genome Data Viewer
    Location:
    19; 19 A
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 19 NC_000085.7 (5091391..5099940)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 19 NC_000085.6 (5041363..5049912)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (5041404..5049917)

    Chromosome 19 - NC_000085.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30581 Neighboring gene nuclear encoded tRNA serine 6 (anticodon GCT) Neighboring gene beta-1,4-glucuronyltransferase 1 Neighboring gene Ras and Rab interactor 1 Neighboring gene CD248 antigen, endosialin

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Potential readthrough

    Included gene: B4gat1

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables NF-kappaB binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables histone deacetylase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of Sin3-type complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    breast cancer metastasis-suppressor 1 homolog

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001374047.1NP_001360976.1  breast cancer metastasis-suppressor 1 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC124502
      Conserved Domains (1) summary
      pfam08598
      Location:60178
      Sds3; Sds3-like
    2. NM_001374048.1NP_001360977.1  breast cancer metastasis-suppressor 1 homolog isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC124502
      Conserved Domains (1) summary
      pfam08598
      Location:60178
      Sds3; Sds3-like
    3. NM_134155.3NP_598916.1  breast cancer metastasis-suppressor 1 homolog isoform 1

      See identical proteins and their annotated locations for NP_598916.1

      Status: VALIDATED

      Source sequence(s)
      AC124502
      Consensus CDS
      CCDS50355.1
      UniProtKB/Swiss-Prot
      Q99N20
      UniProtKB/TrEMBL
      Q547N0
      Related
      ENSMUSP00000112266.3, ENSMUST00000116567.4
      Conserved Domains (1) summary
      pfam08598
      Location:60178
      Sds3; Sds3-like

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000085.7 Reference GRCm39 C57BL/6J

      Range
      5091391..5099940
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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