Format

Send to:

Choose Destination
    • Showing Current items.

    Btaf1 B-TFIID TATA-box binding protein associated factor 1 [ Mus musculus (house mouse) ]

    Gene ID: 107182, updated on 31-Jan-2019

    Summary

    Official Symbol
    Btaf1provided by MGI
    Official Full Name
    B-TFIID TATA-box binding protein associated factor 1provided by MGI
    Primary source
    MGI:MGI:2147538
    See related
    Ensembl:ENSMUSG00000040565
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    TAF170; AI414500; AI447930; E430027O22Rik
    Expression
    Ubiquitous expression in testis adult (RPKM 6.3), liver E14 (RPKM 5.8) and 28 other tissues See more
    Orthologs

    Genomic context

    See Btaf1 in Genome Data Viewer
    Location:
    19; 19 C2
    Exon count:
    39
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (36926079..37014057)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (37000569..37088547)

    Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2 Neighboring gene fibroblast growth factor binding protein 3 Neighboring gene cytoplasmic polyadenylation element binding protein 3 Neighboring gene RIKEN cDNA A330032B11 gene Neighboring gene membrane-associated ring finger (C3HC4) 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 
    • Chemically induced (ENU) (1)  1 citation

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    negative regulation of chromatin binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    intracellular membrane-bounded organelle ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    TATA-binding protein-associated factor 172
    Names
    BTAF1 RNA polymerase II, B-TFIID transcription factor-associated, (Mot1 homolog, S. cerevisiae)
    TBP-associated factor 170

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001080706.1NP_001074175.1  TATA-binding protein-associated factor 172

      Status: PROVISIONAL

      Source sequence(s)
      AC118931
      Consensus CDS
      CCDS37969.1
      UniProtKB/TrEMBL
      E9QAE3
      Related
      ENSMUSP00000097093.3, ENSMUST00000099494.3
      Conserved Domains (6) summary
      cd00046
      Location:12851434
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:12681584
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:16431743
      Helicase_C; Helicase conserved C-terminal domain
      pfam12054
      Location:5851050
      DUF3535; Domain of unknown function (DUF3535)
      pfam13513
      Location:402453
      HEAT_EZ; HEAT-like repeat
      sd00044
      Location:351376
      HEAT; HEAT repeat [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

      Range
      36926079..37014057
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006526561.3XP_006526624.1  TATA-binding protein-associated factor 172 isoform X1

      Conserved Domains (6) summary
      cd00046
      Location:10831232
      DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
      pfam00176
      Location:10661382
      SNF2_N; SNF2 family N-terminal domain
      pfam00271
      Location:14411541
      Helicase_C; Helicase conserved C-terminal domain
      pfam12054
      Location:383848
      DUF3535; Domain of unknown function (DUF3535)
      pfam13513
      Location:200251
      HEAT_EZ; HEAT-like repeat
      sd00044
      Location:149174
      HEAT; HEAT repeat [structural motif]
    2. XM_017318039.1XP_017173528.1  TATA-binding protein-associated factor 172 isoform X2

    Support Center