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    Rrp12 ribosomal RNA processing 12 homolog (S. cerevisiae) [ Mus musculus (house mouse) ]

    Gene ID: 107094, updated on 5-Aug-2018

    Summary

    Official Symbol
    Rrp12provided by MGI
    Official Full Name
    ribosomal RNA processing 12 homolog (S. cerevisiae)provided by MGI
    Primary source
    MGI:MGI:2147437
    See related
    Ensembl:ENSMUSG00000035049
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA408556; AA536972; mKIAA0690
    Expression
    Ubiquitous expression in testis adult (RPKM 14.1), CNS E11.5 (RPKM 6.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rrp12 in Genome Data Viewer
    Location:
    19; 19 C3
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 19 NC_000085.6 (41862851..41896153, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 19 NC_000085.5 (41937341..41970643, complement)

    Chromosome 19 - NC_000085.6Genomic Context describing neighboring genes Neighboring gene frequently rearranged in advanced T cell lymphomas Neighboring gene frequently rearranged in advanced T cell lymphomas 2 Neighboring gene predicted gene, 46644 Neighboring gene phosphoglycerate mutase 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_199447.2NP_955518.1  RRP12-like protein

      See identical proteins and their annotated locations for NP_955518.1

      Status: PROVISIONAL

      Source sequence(s)
      BC062977
      Consensus CDS
      CCDS29814.1
      UniProtKB/Swiss-Prot
      Q6P5B0
      UniProtKB/TrEMBL
      Q3UJA1
      Related
      ENSMUSP00000039853.3, ENSMUST00000038677.3
      Conserved Domains (2) summary
      pfam08161
      Location:473670
      NUC173; NUC173 domain
      pfam14632
      Location:11571204
      SPT6_acidic; Acidic N-terminal SPT6

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000085.6 Reference GRCm38.p4 C57BL/6J

      Range
      41862851..41896153 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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