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    Hmgxb3 HMG box domain containing 3 [ Mus musculus (house mouse) ]

    Gene ID: 106894, updated on 7-Aug-2018

    Summary

    Official Symbol
    Hmgxb3provided by MGI
    Official Full Name
    HMG box domain containing 3provided by MGI
    Primary source
    MGI:MGI:2441817
    See related
    Ensembl:ENSMUSG00000024622
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI413166; mKIAA0194; 2510002C16Rik; A630042L21Rik
    Expression
    Ubiquitous expression in ovary adult (RPKM 11.8), adrenal adult (RPKM 11.0) and 28 other tissues See more
    Orthologs

    Genomic context

    See Hmgxb3 in Genome Data Viewer
    Location:
    18; 18 E1
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 18 NC_000084.6 (61131277..61177050, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 18 NC_000084.5 (61290931..61336704, complement)

    Chromosome 18 - NC_000084.6Genomic Context describing neighboring genes Neighboring gene platelet derived growth factor receptor, beta polypeptide Neighboring gene colony stimulating factor 1 receptor Neighboring gene microRNA 6983 Neighboring gene uncharacterized LOC108168367 Neighboring gene solute carrier family 26 (sulfate transporter), member 2 Neighboring gene phosphodiesterase 6A, cGMP-specific, rod, alpha Neighboring gene ribosomal protein S2, pseudogene 10

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    HMG domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_134134.2NP_598895.2  HMG domain-containing protein 3 isoform 2

      See identical proteins and their annotated locations for NP_598895.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate in-frame segment in the 5' coding region, compared to variant 1, resulting in a shorter protein (isoform 2), compared to isoform 1.
      Source sequence(s)
      AB045322, AK041866, AK132529, BC025148, BG061435, BU611563
      Consensus CDS
      CCDS50301.1
      UniProtKB/TrEMBL
      G3X9M3, Q6NZP6, Q8BY57, Q8R168, Q9JJ64
      Related
      ENSMUSP00000089498.4, ENSMUST00000091884.4
      Conserved Domains (1) summary
      smart00398
      Location:4099
      HMG; high mobility group
    2. NM_178277.1NP_840061.1  HMG domain-containing protein 3 isoform 1

      See identical proteins and their annotated locations for NP_840061.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. It encodes the longer protein (isoform 1).
      Source sequence(s)
      AB045322, BC025148, BC058089
      UniProtKB/TrEMBL
      Q6AXF8, Q6PEF4, Q8R168, Q9JJ64
      Conserved Domains (1) summary
      smart00398
      Location:4099
      HMG; high mobility group

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000084.6 Reference GRCm38.p4 C57BL/6J

      Range
      61131277..61177050 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017317779.1XP_017173268.1  HMG domain-containing protein 3 isoform X1

      UniProtKB/TrEMBL
      Q6NZP6
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