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    Ankrd12 ankyrin repeat domain 12 [ Mus musculus (house mouse) ]

    Gene ID: 106585, updated on 31-Jan-2019

    Summary

    Official Symbol
    Ankrd12provided by MGI
    Official Full Name
    ankyrin repeat domain 12provided by MGI
    Primary source
    MGI:MGI:1914357
    See related
    Ensembl:ENSMUSG00000034647
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    GAC-1; ANCO-2; AI447928; AV347965; mKIAA0874; 2900001A12Rik
    Expression
    Broad expression in CNS E18 (RPKM 6.8), whole brain E14.5 (RPKM 5.1) and 25 other tissues See more
    Orthologs

    Genomic context

    See Ankrd12 in Genome Data Viewer
    Location:
    17; 17 E1.1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 17 NC_000083.6 (65965703..66077089, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (66316841..66426386, complement)

    Chromosome 17 - NC_000083.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 35550 Neighboring gene twisted gastrulation BMP signaling modulator 1 Neighboring gene NADH:ubiquinone oxidoreductase core subunit V2 Neighboring gene WASH complex subunit 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    ankyrin repeat domain-containing protein 12

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001025572.1NP_001020743.1  ankyrin repeat domain-containing protein 12

      See identical proteins and their annotated locations for NP_001020743.1

      Status: VALIDATED

      Source sequence(s)
      AC119957, AC121299, AK122392, BC023046, CF553222, CF907970
      Consensus CDS
      CCDS28943.1
      UniProtKB/TrEMBL
      G5E893, Q05CM6, Q80TP9
      Related
      ENSMUSP00000039035.5, ENSMUST00000038116.12
      Conserved Domains (3) summary
      cd00204
      Location:179291
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:189281
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:184215
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000083.6 Reference GRCm38.p4 C57BL/6J

      Range
      65965703..66077089 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006523399.3XP_006523462.1  ankyrin repeat domain-containing protein 12 isoform X4

      Conserved Domains (3) summary
      cd00204
      Location:156268
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:166258
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:161192
      ANK; ANK repeat [structural motif]
    2. XM_006523397.3XP_006523460.1  ankyrin repeat domain-containing protein 12 isoform X3

      Conserved Domains (3) summary
      cd00204
      Location:156268
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:166258
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:161192
      ANK; ANK repeat [structural motif]
    3. XM_006523396.3XP_006523459.1  ankyrin repeat domain-containing protein 12 isoform X2

      Conserved Domains (3) summary
      cd00204
      Location:179291
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:189281
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:184215
      ANK; ANK repeat [structural motif]
    4. XM_006523393.3XP_006523456.1  ankyrin repeat domain-containing protein 12 isoform X1

      See identical proteins and their annotated locations for XP_006523456.1

      Conserved Domains (3) summary
      cd00204
      Location:179291
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:189281
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:184215
      ANK; ANK repeat [structural motif]
    5. XM_006523395.3XP_006523458.1  ankyrin repeat domain-containing protein 12 isoform X1

      See identical proteins and their annotated locations for XP_006523458.1

      Conserved Domains (3) summary
      cd00204
      Location:179291
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:189281
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:184215
      ANK; ANK repeat [structural motif]
    6. XM_006523394.3XP_006523457.1  ankyrin repeat domain-containing protein 12 isoform X1

      See identical proteins and their annotated locations for XP_006523457.1

      Conserved Domains (3) summary
      cd00204
      Location:179291
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:189281
      Ank_2; Ankyrin repeats (3 copies)
      sd00045
      Location:184215
      ANK; ANK repeat [structural motif]
    7. XM_011246238.2XP_011244540.1  ankyrin repeat domain-containing protein 12 isoform X5

      Conserved Domains (1) summary
      PTZ00121
      Location:89872
      PTZ00121; MAEBL; Provisional
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