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    Scaf8 SR-related CTD-associated factor 8 [ Mus musculus (house mouse) ]

    Gene ID: 106583, updated on 16-Jul-2021

    Summary

    Official Symbol
    Scaf8provided by MGI
    Official Full Name
    SR-related CTD-associated factor 8provided by MGI
    Primary source
    MGI:MGI:1925212
    See related
    Ensembl:ENSMUSG00000046201
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rbm1; Rbm16; AA408306; AI447644; AI448652; AU015035; mKIAA1116; A630086M08Rik; A930036P18Rik
    Expression
    Ubiquitous expression in thymus adult (RPKM 17.4), limb E14.5 (RPKM 13.7) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Scaf8 in Genome Data Viewer
    Location:
    17; 17 A1
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (3165247..3249134)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (3114972..3198859)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (3114972..3198859)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A230045G11 gene Neighboring gene NLR family, pyrin domain containing 2 pseudogene Neighboring gene solute carrier family 11 (proton-coupled divalent metal ion transporters), member 1 pseudogene Neighboring gene 60S ribosomal protein L34 pseudogene Neighboring gene myosin, light chain 12B, regulatory pseudogene Neighboring gene predicted gene, 34035 Neighboring gene CD2-associated protein pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • KIAA1116

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables RNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables RNA polymerase II C-terminal domain phosphoserine binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables RNA polymerase II complex binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables RNA polymerase binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables RNA polymerase core enzyme binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein domain specific binding ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of mRNA cleavage factor complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nuclear matrix ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    SR-related and CTD-associated factor 8
    Names
    CTD-binding SR-like protein rA8
    RNA binding motif protein 16
    SR-like CTD-associated factor 8
    protein SCAF8
    putative RNA-binding protein 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_134123.3NP_598884.2  SR-related and CTD-associated factor 8

      See identical proteins and their annotated locations for NP_598884.2

      Status: VALIDATED

      Source sequence(s)
      AK042381, BC075621, CA560428
      Consensus CDS
      CCDS49927.1
      UniProtKB/Swiss-Prot
      Q6DID3
      UniProtKB/TrEMBL
      Q8C9D3
      Related
      ENSMUSP00000076024.7, ENSMUST00000076734.8
      Conserved Domains (3) summary
      PHA03247
      Location:6111079
      PHA03247; large tegument protein UL36; Provisional
      cd12462
      Location:475553
      RRM_SCAF8; RNA recognition motif in SR-related and CTD-associated factor 8 (SCAF8) and similar proteins
      cd17004
      Location:5135
      CID_SCAF8; CID (CTD-Interacting Domain) of SR-related and CTD-associated factor 8

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      3165247..3249134
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_177053.1: Suppressed sequence

      Description
      NM_177053.1: This RefSeq record was removed by NCBI staff. Contact info@ncbi.nlm.nih.gov for further information.
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