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    Exoc5 exocyst complex component 5 [ Mus musculus (house mouse) ]

    Gene ID: 105504, updated on 19-Mar-2019

    Summary

    Official Symbol
    Exoc5provided by MGI
    Official Full Name
    exocyst complex component 5provided by MGI
    Primary source
    MGI:MGI:2145645
    See related
    Ensembl:ENSMUSG00000061244
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Gm76; SEC10; PRO1912; Sec10l1; AI447711; AI448003
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 11.7), CNS E14 (RPKM 11.3) and 28 other tissues See more
    Orthologs

    Genomic context

    See Exoc5 in Genome Data Viewer
    Location:
    14; 14 C1
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (49011922..49066667, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (49631819..49686342, complement)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 4933429O19 gene Neighboring gene predicted gene 534 Neighboring gene predicted gene, 36024 Neighboring gene adaptor-related protein complex 5, mu 1 subunit Neighboring gene ribosomal protein L19, pseudogene 3 Neighboring gene N(alpha)-acetyltransferase 30, NatC catalytic subunit

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    Ral GTPase binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein N-terminus binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    Golgi to plasma membrane transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    epithelial cell apoptotic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    epithelial cell apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    establishment of planar polarity IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    establishment of planar polarity ISO
    Inferred from Sequence Orthology
    more info
     
    exocytosis IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    non-motile cilium assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    non-motile cilium assembly ISO
    Inferred from Sequence Orthology
    more info
     
    protein localization to plasma membrane IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    vesicle docking IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    exocyst IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    exocyst TAS
    Traceable Author Statement
    more info
    PubMed 

    General protein information

    Preferred Names
    exocyst complex component 5
    Names
    SEC10-like 1
    exocyst complex component Sec10

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_207214.3NP_997097.1  exocyst complex component 5

      See identical proteins and their annotated locations for NP_997097.1

      Status: VALIDATED

      Source sequence(s)
      AK134562, AK164067, AV025936, CT025618
      Consensus CDS
      CCDS49474.1
      UniProtKB/Swiss-Prot
      Q3TPX4
      Related
      ENSMUSP00000125434.1, ENSMUST00000162175.8
      Conserved Domains (1) summary
      pfam07393
      Location:89707
      Sec10; Exocyst complex component Sec10

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      49011922..49066667 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017315766.1XP_017171255.1  exocyst complex component 5 isoform X3

    2. XM_011244884.2XP_011243186.1  exocyst complex component 5 isoform X2

      Conserved Domains (1) summary
      pfam07393
      Location:89683
      Sec10; Exocyst complex component Sec10
    3. XM_011244883.2XP_011243185.1  exocyst complex component 5 isoform X1

      Conserved Domains (1) summary
      pfam07393
      Location:89722
      Sec10; Exocyst complex component Sec10

    RNA

    1. XR_001781081.1 RNA Sequence

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