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    Kctd9 potassium channel tetramerisation domain containing 9 [ Mus musculus (house mouse) ]

    Gene ID: 105440, updated on 31-Jan-2019

    Summary

    Official Symbol
    Kctd9provided by MGI
    Official Full Name
    potassium channel tetramerisation domain containing 9provided by MGI
    Primary source
    MGI:MGI:2145579
    See related
    Ensembl:ENSMUSG00000034327
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Ubiquitous expression in placenta adult (RPKM 5.9), bladder adult (RPKM 5.3) and 25 other tissues See more
    Orthologs

    Genomic context

    See Kctd9 in Genome Data Viewer
    Location:
    14; 14 D1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (67716084..67742310)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (68334155..68360367)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 38409 Neighboring gene cell division cycle associated 2 Neighboring gene gonadotropin releasing hormone 1 Neighboring gene dedicator of cytokinesis 5 Neighboring gene microRNA 6539

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    cullin family protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    identical protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein self-association ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    intracellular signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    protein homooligomerization IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    BTB/POZ domain-containing protein KCTD9

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001111028.1NP_001104498.1  BTB/POZ domain-containing protein KCTD9 isoform a

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
      Source sequence(s)
      AI854539, AK087312, AK158922
      Consensus CDS
      CCDS49531.1
      UniProtKB/Swiss-Prot
      Q80UN1
      UniProtKB/TrEMBL
      E9PUA6
      Related
      ENSMUSP00000114489.1, ENSMUST00000150768.7
      Conserved Domains (5) summary
      smart00225
      Location:90191
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00805
      Location:338377
      Pentapeptide; Pentapeptide repeats (8 copies)
      pfam11834
      Location:264
      KHA; KHA, dimerization domain of potassium ion channel
      pfam13599
      Location:310384
      Pentapeptide_4; Pentapeptide repeats (9 copies)
      cl02518
      Location:91181
      BTB; BTB/POZ domain
    2. NM_001285933.1NP_001272862.1  BTB/POZ domain-containing protein KCTD9 isoform c

      See identical proteins and their annotated locations for NP_001272862.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in its 5' UTR and initiates translation from a downstream start codon, compared to variant 1. The encoded isoform (c) has a shorter N-terminus, compared to isoform a.
      Source sequence(s)
      AI854539, AK087312, AK158922
      UniProtKB/Swiss-Prot
      Q80UN1
      Conserved Domains (2) summary
      COG1357
      Location:54264
      YjbI; Uncharacterized protein YjbI, contains pentapeptide repeats [Function unknown]
      cl02518
      Location:167
      BTB; BTB/POZ domain
    3. NM_134073.2NP_598834.2  BTB/POZ domain-containing protein KCTD9 isoform b

      See identical proteins and their annotated locations for NP_598834.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an in-frame exon in the central coding region, compared to variant 1. The encoded isoform (b) is shorter, compared to isoform a.
      Source sequence(s)
      AI854539, AK158922
      Consensus CDS
      CCDS27230.2
      UniProtKB/Swiss-Prot
      Q80UN1
      Related
      ENSMUSP00000077200.6, ENSMUST00000078053.12
      Conserved Domains (5) summary
      smart00225
      Location:90191
      BTB; Broad-Complex, Tramtrack and Bric a brac
      pfam00805
      Location:288327
      Pentapeptide; Pentapeptide repeats (8 copies)
      pfam11834
      Location:264
      KHA; KHA, dimerization domain of potassium ion channel
      pfam13599
      Location:260334
      Pentapeptide_4; Pentapeptide repeats (9 copies)
      cl02518
      Location:91181
      BTB; BTB/POZ domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      67716084..67742310
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006518343.2XP_006518406.1  BTB/POZ domain-containing protein KCTD9 isoform X1

      See identical proteins and their annotated locations for XP_006518406.1

      Related
      ENSMUSP00000120440.1, ENSMUST00000152243.7
      Conserved Domains (2) summary
      COG1357
      Location:54264
      YjbI; Uncharacterized protein YjbI, contains pentapeptide repeats [Function unknown]
      cl02518
      Location:167
      BTB; BTB/POZ domain
    2. XM_006518342.2XP_006518405.1  BTB/POZ domain-containing protein KCTD9 isoform X1

      See identical proteins and their annotated locations for XP_006518405.1

      Conserved Domains (2) summary
      COG1357
      Location:54264
      YjbI; Uncharacterized protein YjbI, contains pentapeptide repeats [Function unknown]
      cl02518
      Location:167
      BTB; BTB/POZ domain

    RNA

    1. XR_001781078.1 RNA Sequence

    2. XR_383124.3 RNA Sequence

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