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    E330034G19Rik RIKEN cDNA E330034G19 gene [ Mus musculus (house mouse) ]

    Gene ID: 105418, updated on 25-Sep-2017

    Summary

    Official Symbol
    E330034G19Rikprovided by MGI
    Official Full Name
    RIKEN cDNA E330034G19 geneprovided by MGI
    Primary source
    MGI:MGI:2145557
    See related
    Ensembl:ENSMUSG00000038925 Vega:OTTMUSG00000034630
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Zpac; AA415275
    Expression
    Biased expression in testis adult (RPKM 1.8) and ovary adult (RPKM 0.8) See more

    Genomic context

    See E330034G19Rik in Genome Data Viewer
    Location:
    14; 14 A3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 14 NC_000080.6 (24293035..24309960)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 14 NC_000080.5 (25112586..25129181)

    Chromosome 14 - NC_000080.6Genomic Context describing neighboring genes Neighboring gene discs large MAGUK scaffold protein 5 Neighboring gene polymerase (RNA) III (DNA directed) polypeptide A pseudogene Neighboring gene cysteine rich protein 2 pseudogene Neighboring gene predicted gene, 41108

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    Protein E330034G19Rik; RIKEN cDNA E330034G19
    Names
    zygote-specific proteasome assembly chaperone

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033214.2NP_001028386.1  Protein E330034G19Rik isoform 1

      See identical proteins and their annotated locations for NP_001028386.1

      Status: VALIDATED

      Source sequence(s)
      AK136036
      Consensus CDS
      CCDS49418.1
      UniProtKB/TrEMBL
      Q3UWX6
      Related
      ENSMUSP00000124917.2, ENSMUST00000161740.8
      Conserved Domains (2) summary
      cd16269
      Location:289300
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:250313
      GBP_C; Guanylate-binding protein, C-terminal domain
    2. NM_001346536.1NP_001333465.1  Protein E330034G19Rik isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC161374, BG067232, CA555840
      UniProtKB/TrEMBL
      E0CX49

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000080.6 Reference GRCm38.p4 C57BL/6J

      Range
      24293035..24309960
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006518327.2XP_006518390.1  RIKEN cDNA E330034G19 isoform X1

      See identical proteins and their annotated locations for XP_006518390.1

      Related
      ENSMUSP00000124926.1, OTTMUSP00000047871, ENSMUST00000162224.7, OTTMUST00000087891
      Conserved Domains (1) summary
      TIGR02168
      Location:15278
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
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