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    LGALSL-DT LGALSL divergent transcript [ Homo sapiens (human) ]

    Gene ID: 105374771, updated on 25-Nov-2025
    Official Symbol
    LGALSL-DTprovided by HGNC
    Official Full Name
    LGALSL divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:53951
    See related
    AllianceGenome:HGNC:53951
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    Try the new Gene page
    Try the new Transcripts and proteins table
    See LGALSL-DT in Genome Data Viewer
    Location:
    2p14
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2025_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (64390956..64454878, complement)
    RS_2025_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (64400116..64464462, complement)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374768 Neighboring gene microRNA 4433b Neighboring gene microRNA 4433a Neighboring gene ribosomal protein L23a pseudogene 37 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15892 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr2:64631317-64631826 Neighboring gene uncharacterized LOC124907775 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11552 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11553 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 11554 Neighboring gene galectin like Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:64711199-64712398 Neighboring gene Sharpr-MPRA regulatory region 8770 Neighboring gene long intergenic non-protein coding RNA 1805 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 15893 Neighboring gene AFTPH divergent transcript

    Go to nucleotide: Graphics FASTA GenBank

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Related articles in PubMed

    1. Identification of aberrantly expressed long non-coding RNAs in postmenopausal osteoporosis. Fei Q, et al. Int J Mol Med, 2018 Jun. PMID 29568943, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Review eQTL and phenotype association data in this region using PheGenI

    See variants in ClinVar

    See studies and variants in dbVar

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_200267.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC008074, AC114752

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2025_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

      Range
      64390956..64454878 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_002959392.2 RNA Sequence

    2. XR_001739494.3 RNA Sequence

    3. XR_001739493.3 RNA Sequence

    4. XR_001739492.3 RNA Sequence

    5. XR_001739491.3 RNA Sequence

    6. XR_940167.4 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060926.1 Alternate T2T-CHM13v2.0

      Range
      64400116..64464462 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007072122.1 RNA Sequence

    2. XR_007072123.1 RNA Sequence

    3. XR_007072125.1 RNA Sequence

    4. XR_007072124.1 RNA Sequence

    5. XR_007072121.1 RNA Sequence

    6. XR_007072126.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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