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    LINC01684 long intergenic non-protein coding RNA 1684 [ Homo sapiens (human) ]

    Gene ID: 105372751, updated on 9-Jun-2025
    Official Symbol
    LINC01684provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1684provided by HGNC
    Primary source
    HGNC:HGNC:52472
    See related
    Ensembl:ENSG00000237484 AllianceGenome:HGNC:52472
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    lnc-JAM2-6
    Expression
    Low expression observed in reference dataset See more
    NEW
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    See LINC01684 in Genome Data Viewer
    Location:
    21q21.2
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 21 NC_000021.9 (24428740..24547942)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 21 NC_060945.1 (22786169..22905376)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 21 NC_000021.8 (25801054..25920256)

    Chromosome 21 - NC_000021.9Genomic Context describing neighboring genes Neighboring gene MPRA-validated peak4384 silencer Neighboring gene vomeronasal 2 receptor 20 pseudogene Neighboring gene MPRA-validated peak4387 silencer Neighboring gene long intergenic non-protein coding RNA 1689 Neighboring gene MPRA-validated peak4389 silencer Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_61838 Neighboring gene MPRA-validated peak4391 silencer Neighboring gene meiotic recombination hotspot A Neighboring gene long intergenic non-protein coding RNA 1692 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18302 Neighboring gene uncharacterized LOC107985516 Neighboring gene MIA SH3 domain ER export factor 2 pseudogene

    Go to nucleotide: Graphics FASTA GenBank

    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Related articles in PubMed

    1. Genetic variation in long noncoding RNAs and the risk of nonalcoholic fatty liver disease. Sookoian S, et al. Oncotarget, 2017 Apr 4. PMID 28206970, Free PMC Article
    2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Review eQTL and phenotype association data in this region using PheGenI

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    Clone Names

    • FLJ42200, AP000476.1

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_135519.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP000476, BX538159, DB125182
      Related
      ENST00000415182.1

    2. NR_135520.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK124194, AP000476
      Related
      ENST00000453784.2

    3. NR_135521.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP000476

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000021.9 Reference GRCh38.p14 Primary Assembly

      Range
      24428740..24547942
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060945.1 Alternate T2T-CHM13v2.0

      Range
      22786169..22905376
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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