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    Utp15 UTP15 small subunit processome component [ Mus musculus (house mouse) ]

    Gene ID: 105372, updated on 2-Oct-2018

    Summary

    Official Symbol
    Utp15provided by MGI
    Official Full Name
    UTP15 small subunit processome componentprovided by MGI
    Primary source
    MGI:MGI:2145443
    See related
    Ensembl:ENSMUSG00000041747
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AW544865
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 7.4), placenta adult (RPKM 5.9) and 28 other tissues See more
    Orthologs

    Genomic context

    See Utp15 in Genome Data Viewer
    Location:
    13; 13 D1
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 13 NC_000079.6 (98246845..98262992, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (99016800..99032947, complement)

    Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 34388 Neighboring gene Rho guanine nucleotide exchange factor (GEF) 28 Neighboring gene predicted gene, 34469 Neighboring gene ankyrin repeat, family A (RFXANK-like), 2 Neighboring gene predicted gene 21976

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    positive regulation of rRNA processing ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of transcription by RNA polymerase I ISO
    Inferred from Sequence Orthology
    more info
     
    rRNA processing IEA
    Inferred from Electronic Annotation
    more info
     
    ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    endoplasmic reticulum ISO
    Inferred from Sequence Orthology
    more info
     
    fibrillar center ISO
    Inferred from Sequence Orthology
    more info
     
    nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    U3 small nucleolar RNA-associated protein 15 homolog
    Names
    UTP15, U3 small nucleolar ribonucleoprotein, homolog
    src-associated protein SAW

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_178918.3NP_849249.1  U3 small nucleolar RNA-associated protein 15 homolog

      See identical proteins and their annotated locations for NP_849249.1

      Status: PROVISIONAL

      Source sequence(s)
      AC123056
      Consensus CDS
      CCDS26712.1
      UniProtKB/Swiss-Prot
      Q8C7V3
      Related
      ENSMUSP00000048204.2, ENSMUST00000040972.3
      Conserved Domains (4) summary
      COG2319
      Location:28310
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:39298
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam09384
      Location:343487
      UTP15_C; UTP15 C terminal
      sd00039
      Location:4178
      7WD40; WD40 repeat [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000079.6 Reference GRCm38.p4 C57BL/6J

      Range
      98246845..98262992 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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