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    Ttc7b tetratricopeptide repeat domain 7B [ Mus musculus (house mouse) ]

    Gene ID: 104718, updated on 23-Jun-2021

    Summary

    Official Symbol
    Ttc7bprovided by MGI
    Official Full Name
    tetratricopeptide repeat domain 7Bprovided by MGI
    Primary source
    MGI:MGI:2144724
    See related
    Ensembl:ENSMUSG00000033530
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ttc7l; Ttc7l1; AA408451
    Expression
    Broad expression in cortex adult (RPKM 38.4), frontal lobe adult (RPKM 33.6) and 26 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Ttc7b in Genome Data Viewer
    Location:
    12; 12 E
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (100267029..100487134, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (100300770..100520837, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (101538980..101759032, complement)

    Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene calmodulin 1 Neighboring gene predicted gene, 40557 Neighboring gene predicted gene 10432 Neighboring gene predicted gene, 51958 Neighboring gene predicted gene, 53757 Neighboring gene predicted gene, 36375 Neighboring gene ribosomal protein S6 kinase, polypeptide 5 Neighboring gene predicted gene 2614

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in phosphatidylinositol phosphate biosynthetic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in phosphatidylinositol phosphate biosynthetic process ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in protein localization to plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in protein localization to plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    tetratricopeptide repeat protein 7B
    Names
    TPR repeat protein 7B

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001033213.1NP_001028385.1  tetratricopeptide repeat protein 7B isoform 1

      Status: VALIDATED

      Source sequence(s)
      AI840229, AK046740, CB248597, CJ139759
      Consensus CDS
      CCDS49141.1
      UniProtKB/Swiss-Prot
      E9Q6P5
      Related
      ENSMUSP00000052107.7, ENSMUST00000062957.8
      Conserved Domains (3) summary
      TIGR02917
      Location:343834
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:431459
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:730758
      TPR; TPR repeat [structural motif]
    2. NM_001374711.1NP_001361640.1  tetratricopeptide repeat protein 7B isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC123705, AC159633, AC160340
      Consensus CDS
      CCDS88387.1
      Related
      ENSMUSP00000152299.2, ENSMUST00000223020.2
      Conserved Domains (4) summary
      TIGR00990
      Location:686859
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      TIGR02917
      Location:343851
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:431459
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:747775
      TPR; TPR repeat [structural motif]

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000078.7 Reference GRCm39 C57BL/6J

      Range
      100267029..100487134 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006515326.4XP_006515389.1  tetratricopeptide repeat protein 7B isoform X3

      Conserved Domains (4) summary
      COG0457
      Location:365619
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      TIGR00990
      Location:755928
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00008
      Location:431459
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:816844
      TPR; TPR repeat [structural motif]
    2. XM_006515334.4XP_006515397.1  tetratricopeptide repeat protein 7B isoform X11

      Conserved Domains (3) summary
      TIGR02917
      Location:351842
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:439467
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:738766
      TPR; TPR repeat [structural motif]
    3. XM_017314925.3XP_017170414.1  tetratricopeptide repeat protein 7B isoform X10

      Conserved Domains (3) summary
      TIGR02917
      Location:351843
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:439467
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:739767
      TPR; TPR repeat [structural motif]
    4. XM_017314924.3XP_017170413.1  tetratricopeptide repeat protein 7B isoform X9

      Conserved Domains (3) summary
      TIGR02917
      Location:351851
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:439467
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:747775
      TPR; TPR repeat [structural motif]
    5. XM_017314922.3XP_017170411.1  tetratricopeptide repeat protein 7B isoform X8

      Conserved Domains (3) summary
      TIGR02917
      Location:351858
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:439467
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:754782
      TPR; TPR repeat [structural motif]
    6. XM_017314921.3XP_017170410.1  tetratricopeptide repeat protein 7B isoform X7

      Conserved Domains (4) summary
      TIGR00990
      Location:694867
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      TIGR02917
      Location:351859
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:439467
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:755783
      TPR; TPR repeat [structural motif]
    7. XM_017314920.3XP_017170409.1  tetratricopeptide repeat protein 7B isoform X6

      Conserved Domains (4) summary
      TIGR00990
      Location:702875
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      TIGR02917
      Location:351867
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:439467
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:763791
      TPR; TPR repeat [structural motif]
    8. XM_017314919.3XP_017170408.1  tetratricopeptide repeat protein 7B isoform X5

      Conserved Domains (4) summary
      TIGR00990
      Location:709882
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      TIGR02917
      Location:351874
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:439467
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:770798
      TPR; TPR repeat [structural motif]
    9. XM_006515328.4XP_006515391.1  tetratricopeptide repeat protein 7B isoform X4

      Conserved Domains (4) summary
      TIGR00990
      Location:748921
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      TIGR02917
      Location:351913
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:439467
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:809837
      TPR; TPR repeat [structural motif]
    10. XM_011243973.4XP_011242275.1  tetratricopeptide repeat protein 7B isoform X2

      Conserved Domains (4) summary
      COG0457
      Location:373627
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      TIGR00990
      Location:756929
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00008
      Location:439467
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:817845
      TPR; TPR repeat [structural motif]
    11. XM_006515325.2XP_006515388.1  tetratricopeptide repeat protein 7B isoform X1

      Conserved Domains (4) summary
      COG0457
      Location:373627
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      TIGR00990
      Location:763936
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00008
      Location:439467
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:824852
      TPR; TPR repeat [structural motif]
    12. XM_036157145.1XP_036013038.1  tetratricopeptide repeat protein 7B isoform X16

      Conserved Domains (4) summary
      TIGR00990
      Location:289462
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      TIGR02917
      Location:24454
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:5179
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:350378
      TPR; TPR repeat [structural motif]
    13. XM_030246492.1XP_030102352.1  tetratricopeptide repeat protein 7B isoform X15

      Conserved Domains (3) summary
      TIGR02917
      Location:85576
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00008
      Location:173201
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:472500
      TPR; TPR repeat [structural motif]
    14. XM_030246491.1XP_030102351.1  tetratricopeptide repeat protein 7B isoform X14

      Conserved Domains (4) summary
      COG0457
      Location:107361
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      TIGR00990
      Location:497670
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00008
      Location:173201
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:558586
      TPR; TPR repeat [structural motif]
    15. XM_030246490.1XP_030102350.1  tetratricopeptide repeat protein 7B isoform X13

      Conserved Domains (4) summary
      COG0457
      Location:263517
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      TIGR00990
      Location:653826
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00008
      Location:329357
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:714742
      TPR; TPR repeat [structural motif]
    16. XM_036157144.1XP_036013037.1  tetratricopeptide repeat protein 7B isoform X12

      Conserved Domains (4) summary
      COG0457
      Location:271525
      TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
      TIGR00990
      Location:661834
      3a0801s09; mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)
      sd00008
      Location:337365
      TPR_YbbN; TPR repeat [structural motif]
      sd00006
      Location:722750
      TPR; TPR repeat [structural motif]
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