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    0610010K14Rik RIKEN cDNA 0610010K14 gene [ Mus musculus (house mouse) ]

    Gene ID: 104457, updated on 31-Jan-2019

    Summary

    Official Symbol
    0610010K14Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 0610010K14 geneprovided by MGI
    Primary source
    MGI:MGI:1915609
    See related
    Ensembl:ENSMUSG00000020831
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Bap18; AL033328; AU045833; 1110020A23Rik
    Expression
    Ubiquitous expression in CNS E11.5 (RPKM 52.3), CNS E14 (RPKM 43.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See 0610010K14Rik in Genome Data Viewer
    Location:
    11; 11 B3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (70235204..70237914, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (70048706..70051416, complement)

    Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene microRNA 497b Neighboring gene microRNA 195a Neighboring gene microRNA 497 Neighboring gene ribonuclease, RNase K Neighboring gene predicted gene, 40191 Neighboring gene arachidonate 12-lipoxygenase

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    chromatin organization IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    MLL1 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    MLL1 complex ISO
    Inferred from Sequence Orthology
    more info
     
    NURF complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    NURF complex ISO
    Inferred from Sequence Orthology
    more info
     
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    chromatin complexes subunit BAP18
    Names
    BPTF-associated protein of 18 kDa
    MLL1/MLL complex subunit C17orf49 homolog

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001177601.1NP_001171072.1  chromatin complexes subunit BAP18 isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and it encodes the longer protein (isoform 1).
      Source sequence(s)
      AA189586, AK003842, CK791552, EL959640
      Consensus CDS
      CCDS48834.1
      UniProtKB/Swiss-Prot
      Q9DCT6
      UniProtKB/TrEMBL
      D3Z687
      Related
      ENSMUSP00000104216.3, ENSMUST00000108576.9
      Conserved Domains (2) summary
      smart00717
      Location:4177
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:4177
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    2. NM_001177603.1NP_001171074.1  chromatin complexes subunit BAP18 isoform 3

      See identical proteins and their annotated locations for NP_001171074.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an alternate, in-frame exon in the 3' coding region, compared to variant 1. The resulting protein (isoform 3) is shorter when it is compared to isoform 1.
      Source sequence(s)
      AA189586, AW557771, CB192659
      Consensus CDS
      CCDS48833.1
      UniProtKB/Swiss-Prot
      Q9DCT6
      Related
      ENSMUSP00000021181.6, ENSMUST00000021181.12
      Conserved Domains (2) summary
      smart00717
      Location:4177
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:4177
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...
    3. NM_001177606.1NP_001171077.1  chromatin complexes subunit BAP18 isoform 5

      See identical proteins and their annotated locations for NP_001171077.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (5) lacks two alternate, in-frame exons, compared to variant 1. The resulting protein (isoform 5) is shorter when it is compared to isoform 1.
      Source sequence(s)
      AA189586, AK003842, AK169173
      Consensus CDS
      CCDS48832.1
      UniProtKB/Swiss-Prot
      Q9DCT6
      Related
      ENSMUSP00000104220.1, ENSMUST00000108579.7
    4. NM_001177607.1NP_001171078.1  chromatin complexes subunit BAP18 isoform 6

      See identical proteins and their annotated locations for NP_001171078.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (6) lacks two alternate, in-frame exons and uses a different splice site in the 3' UTR, compared to variant 1. The resulting protein (isoform 6) has a shorter and distinct C-terminue when it is compared to isoform 1.
      Source sequence(s)
      AA189586, AK003842, BE861439
      Consensus CDS
      CCDS48831.1
      UniProtKB/Swiss-Prot
      Q9DCT6
      UniProtKB/TrEMBL
      A2CF83
      Related
      ENSMUSP00000104215.2, ENSMUST00000108575.8
    5. NM_026757.2NP_081033.1  chromatin complexes subunit BAP18 isoform 4

      See identical proteins and their annotated locations for NP_081033.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks an alternate, in-frame exon in the 5' coding region and uses a different splice site in the 3' coding region, compared to variant 1. The resulting protein (isoform 4) is shorter and has a distinct C-terminus when compared to isoform 1.
      Source sequence(s)
      AA189586, AK003842
      Consensus CDS
      CCDS24940.1
      UniProtKB/Swiss-Prot
      Q9DCT6
      Related
      ENSMUSP00000099629.3, ENSMUST00000102569.9
    6. NM_145758.1NP_665701.1  chromatin complexes subunit BAP18 isoform 2

      See identical proteins and their annotated locations for NP_665701.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses a different splice site in the 3' coding region, compared to variant 1. The resulting protein (isoform 2) has a shorter and distinct C-terminus when it is compared to isoform 1.
      Source sequence(s)
      AA189586, AK002491, AK003842
      Consensus CDS
      CCDS48835.1
      UniProtKB/Swiss-Prot
      Q9DCT6
      Related
      ENSMUSP00000104219.2, ENSMUST00000108578.8
      Conserved Domains (2) summary
      smart00717
      Location:4177
      SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
      cd00167
      Location:4177
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

      Range
      70235204..70237914 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017314213.1XP_017169702.1  chromatin complexes subunit BAP18 isoform X1

    Reference GRCm38.p4 NOD/MrkTac

    Genomic

    1. NT_187026.1 Reference GRCm38.p4 NOD/MrkTac

      Range
      339710..342421 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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