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    Arl1 ADP-ribosylation factor-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 104303, updated on 31-Jan-2019

    Summary

    Official Symbol
    Arl1provided by MGI
    Official Full Name
    ADP-ribosylation factor-like 1provided by MGI
    Primary source
    MGI:MGI:99436
    See related
    Ensembl:ENSMUSG00000060904
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AU019749; 2310008D22Rik
    Expression
    Ubiquitous expression in bladder adult (RPKM 60.6), placenta adult (RPKM 54.1) and 28 other tissues See more
    Orthologs

    Genomic context

    See Arl1 in Genome Data Viewer
    Location:
    10; 10 C1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 10 NC_000076.6 (88731414..88743202)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 10 NC_000076.5 (88194159..88205947)

    Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 46192 Neighboring gene predicted gene 4925 Neighboring gene UTP20 small subunit processome component Neighboring gene solute carrier family 5 (iodide transporter), member 8

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    Pathways from BioSystems

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    GTP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    GTP binding ISO
    Inferred from Sequence Orthology
    more info
     
    GTPase activity ISO
    Inferred from Sequence Orthology
    more info
     
    enzyme activator activity ISO
    Inferred from Sequence Orthology
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    protein domain specific binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    Golgi organization ISO
    Inferred from Sequence Orthology
    more info
     
    Golgi vesicle transport ISO
    Inferred from Sequence Orthology
    more info
     
    activation of phospholipase D activity ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    protein localization to Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    retrograde transport, endosome to Golgi ISO
    Inferred from Sequence Orthology
    more info
     
    toxin metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Golgi apparatus ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    trans-Golgi network ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    ADP-ribosylation factor-like protein 1
    Names
    ADP-ribosylation-like 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_025859.3NP_080135.2  ADP-ribosylation factor-like protein 1

      See identical proteins and their annotated locations for NP_080135.2

      Status: PROVISIONAL

      Source sequence(s)
      AK010732
      Consensus CDS
      CCDS36025.1
      UniProtKB/Swiss-Prot
      P61211
      UniProtKB/TrEMBL
      Q14AC7
      Related
      ENSMUSP00000111942.2, ENSMUST00000116234.8
      Conserved Domains (1) summary
      cd04151
      Location:19176
      Arl1; ADP ribosylation factor 1 (Arf1)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000076.6 Reference GRCm38.p4 C57BL/6J

      Range
      88731414..88743202
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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