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    PCGF3 polycomb group ring finger 3 [ Homo sapiens (human) ]

    Gene ID: 10336, updated on 12-Aug-2022

    Summary

    Official Symbol
    PCGF3provided by HGNC
    Official Full Name
    polycomb group ring finger 3provided by HGNC
    Primary source
    HGNC:HGNC:10066
    See related
    Ensembl:ENSG00000185619 MIM:617543; AllianceGenome:HGNC:10066
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    RNF3; DONG1; RNF3A
    Summary
    The protein encoded by this gene contains a C3HC4 type RING finger, which is a motif known to be involved in protein-protein interactions. The specific function of this protein has not yet been determined. [provided by RefSeq, Jul 2008]
    Expression
    Ubiquitous expression in skin (RPKM 24.1), endometrium (RPKM 13.1) and 25 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See PCGF3 in Genome Data Viewer
    Location:
    4p16.3
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    110 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (705832..770089)
    110 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (705458..767880)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (699621..763877)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124900643 Neighboring gene solute carrier family 49 member 3 Neighboring gene myosin light chain 5 Neighboring gene uncharacterized LOC124900172 Neighboring gene uncharacterized LOC107986246 Neighboring gene uncharacterized LOC124900644 Neighboring gene chloride intracellular channel protein 6-like Neighboring gene PCGF3 antisense RNA 1 Neighboring gene uncharacterized LOC105374339 Neighboring gene complexin 1 Neighboring gene uncharacterized LOC105374340

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Phenotypes

    EBI GWAS Catalog

    Description
    Genome wide association study for plasma levels of natural anticoagulant inhibitors and protein C anticoagulant pathway: the MARTHA project.
    EBI GWAS Catalog

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • FLJ36550, FLJ43813, MGC40413, MGC129615, DKFZp686D20235

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in histone H2A-K119 monoubiquitination IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in histone H2A-K119 monoubiquitination ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in inactivation of X chromosome by genomic imprinting ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    Component Evidence Code Pubs
    part_of PRC1 complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    part_of PcG protein complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    colocalizes_with X chromosome ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in nucleoplasm IDA
    Inferred from Direct Assay
    more info
     
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 

    General protein information

    Preferred Names
    polycomb group RING finger protein 3
    Names
    RING finger protein 3A
    ring finger protein 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001317836.3NP_001304765.1  polycomb group RING finger protein 3 isoform a

      Status: REVIEWED

      Description
      Transcript Variant: This variant (1) encodes the longest isoform (a). Variants 1-7 all encode the same isoform (a).
      Source sequence(s)
      AC107464, AC139887
      Consensus CDS
      CCDS3339.2
      UniProtKB/Swiss-Prot
      O15262, Q3KNV8
      UniProtKB/TrEMBL
      B3KQ06, B3KWT8, B4DTN5
      Conserved Domains (2) summary
      cd16735
      Location:1460
      RING-HC_PCGF3; RING finger found in polycomb group RING finger protein 3 (PCGF3) and similar proteins
      cd17083
      Location:154236
      RAWUL_PCGF3; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 3 (PCGF3) and similar proteins
    2. NM_001395245.1NP_001382174.1  polycomb group RING finger protein 3 isoform a

      Status: REVIEWED

      Source sequence(s)
      AC107464, AC139887
      UniProtKB/Swiss-Prot
      O15262
      Conserved Domains (2) summary
      cd16735
      Location:1460
      RING-HC_PCGF3; RING finger found in polycomb group RING finger protein 3 (PCGF3) and similar proteins
      cd17083
      Location:154236
      RAWUL_PCGF3; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 3 (PCGF3) and similar proteins
    3. NM_001395246.1NP_001382175.1  polycomb group RING finger protein 3 isoform a

      Status: REVIEWED

      Source sequence(s)
      AC107464, AC139887
      UniProtKB/Swiss-Prot
      O15262
      Conserved Domains (2) summary
      cd16735
      Location:1460
      RING-HC_PCGF3; RING finger found in polycomb group RING finger protein 3 (PCGF3) and similar proteins
      cd17083
      Location:154236
      RAWUL_PCGF3; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 3 (PCGF3) and similar proteins
    4. NM_001395247.1NP_001382176.1  polycomb group RING finger protein 3 isoform a

      Status: REVIEWED

      Source sequence(s)
      AC107464, AC139887
      UniProtKB/Swiss-Prot
      O15262
      Conserved Domains (2) summary
      cd16735
      Location:1460
      RING-HC_PCGF3; RING finger found in polycomb group RING finger protein 3 (PCGF3) and similar proteins
      cd17083
      Location:154236
      RAWUL_PCGF3; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 3 (PCGF3) and similar proteins
    5. NM_001395248.1NP_001382177.1  polycomb group RING finger protein 3 isoform a

      Status: REVIEWED

      Source sequence(s)
      AC107464, AC139887
      UniProtKB/Swiss-Prot
      O15262
      Conserved Domains (2) summary
      cd16735
      Location:1460
      RING-HC_PCGF3; RING finger found in polycomb group RING finger protein 3 (PCGF3) and similar proteins
      cd17083
      Location:154236
      RAWUL_PCGF3; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 3 (PCGF3) and similar proteins
    6. NM_001395249.1NP_001382178.1  polycomb group RING finger protein 3 isoform a

      Status: REVIEWED

      Source sequence(s)
      AC107464, AC139887
      UniProtKB/Swiss-Prot
      O15262
      Conserved Domains (2) summary
      cd16735
      Location:1460
      RING-HC_PCGF3; RING finger found in polycomb group RING finger protein 3 (PCGF3) and similar proteins
      cd17083
      Location:154236
      RAWUL_PCGF3; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 3 (PCGF3) and similar proteins
    7. NM_001395250.1NP_001382179.1  polycomb group RING finger protein 3 isoform b

      Status: REVIEWED

      Source sequence(s)
      AC107464, AC139887
      UniProtKB/TrEMBL
      B3KWT8
      Conserved Domains (2) summary
      cd17083
      Location:120202
      RAWUL_PCGF3; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 3 (PCGF3) and similar proteins
      cl17238
      Location:226
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    8. NM_001395251.1NP_001382180.1  polycomb group RING finger protein 3 isoform b

      Status: REVIEWED

      Source sequence(s)
      AC107464, AC139887
      UniProtKB/TrEMBL
      B3KWT8
      Conserved Domains (2) summary
      cd17083
      Location:120202
      RAWUL_PCGF3; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 3 (PCGF3) and similar proteins
      cl17238
      Location:226
      RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
    9. NM_006315.7NP_006306.2  polycomb group RING finger protein 3 isoform a

      See identical proteins and their annotated locations for NP_006306.2

      Status: REVIEWED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon in the 5' UTR compared to variant 1. Variants 1-7 all encode the same isoform (a).
      Source sequence(s)
      AC107464, AC139887
      Consensus CDS
      CCDS3339.2
      UniProtKB/Swiss-Prot
      O15262, Q3KNV8
      Related
      ENSP00000354724.5, ENST00000362003.10
      Conserved Domains (2) summary
      cd16735
      Location:1460
      RING-HC_PCGF3; RING finger found in polycomb group RING finger protein 3 (PCGF3) and similar proteins
      cd17083
      Location:154236
      RAWUL_PCGF3; RING finger- and WD40-associated ubiquitin-like (RAWUL) domain found in polycomb group RING finger protein 3 (PCGF3) and similar proteins

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      705832..770089
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047449500.1XP_047305456.1  polycomb group RING finger protein 3 isoform X1

      UniProtKB/TrEMBL
      B3KWT8

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      705458..767880
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)