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    KANTR KANTR integral membrane protein [ Homo sapiens (human) ]

    Gene ID: 102723508, updated on 17-Jun-2024

    Summary

    Official Symbol
    KANTRprovided by HGNC
    Official Full Name
    KANTR integral membrane proteinprovided by HGNC
    Primary source
    HGNC:HGNC:49510
    See related
    Ensembl:ENSG00000232593 MIM:301019; AllianceGenome:HGNC:49510
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    Spasm; LINC01155
    Summary
    This gene is thought to produce a functional long non-coding RNA. Mutation of this locus in mouse causes tremors and spastic movements, suggesting a role for this gene in neurological development or function. [provided by RefSeq, Feb 2015]
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See KANTR in Genome Data Viewer
    Location:
    Xp11.22
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (53094142..53147921)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (52380378..52434199)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (53123324..53177103)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 173 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:53100667-53101168 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29651 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20852 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20853 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20854 Neighboring gene H3K27ac hESC enhancer GRCh37_chrX:53122416-53123240 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29653 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20855 Neighboring gene TSPY like 2 Neighboring gene RNA, U7 small nuclear 37 pseudogene Neighboring gene actin gamma 1 pseudogene 10 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chrX:53192545-53193079 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20856 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29654 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 29655 Neighboring gene lysine demethylase 5C Neighboring gene microRNA 6895 Neighboring gene microRNA 6894

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    KDM5C adjacent transcript
    Names
    KDM5C adjacent non-coding transcript
    long intergenic non-protein coding RNA 1155

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001397448.1NP_001384377.1  KDM5C adjacent transcript

      Status: VALIDATED

      Source sequence(s)
      AL139396, AL591212
      Consensus CDS
      CCDS94609.1
      UniProtKB/Swiss-Prot
      A0A1W2PQU2
      Related
      ENSP00000492284.1, ENST00000604062.7
    2. NM_001397450.1NP_001384379.1  KDM5C adjacent transcript

      Status: VALIDATED

      Source sequence(s)
      AL139396, AL591212
      Consensus CDS
      CCDS94609.1
      UniProtKB/Swiss-Prot
      A0A1W2PQU2
    3. NM_001397451.1NP_001384380.1  KDM5C adjacent transcript

      Status: VALIDATED

      Source sequence(s)
      AL139396, AL591212
      Consensus CDS
      CCDS94609.1
      UniProtKB/Swiss-Prot
      A0A1W2PQU2
    4. NM_001397452.1NP_001384381.1  KDM5C adjacent transcript

      Status: VALIDATED

      Source sequence(s)
      AL139396, AL591212
      Consensus CDS
      CCDS94609.1
      UniProtKB/Swiss-Prot
      A0A1W2PQU2
    5. NM_001397453.1NP_001384382.1  KDM5C adjacent transcript

      Status: VALIDATED

      Source sequence(s)
      AL139396, AL591212
      Consensus CDS
      CCDS94609.1
      UniProtKB/Swiss-Prot
      A0A1W2PQU2

    RNA

    1. NR_110456.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL139396, AL591212
    2. NR_145973.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL139396, AL591212
    3. NR_145974.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL139396, AL591212
    4. NR_145975.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL139396, AL591212

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      53094142..53147921
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      52380378..52434199
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_145976.1: Suppressed sequence

      Description
      NR_145976.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
    2. NR_145977.1: Suppressed sequence

      Description
      NR_145977.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
    3. NR_145978.1: Suppressed sequence

      Description
      NR_145978.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
    4. NR_145979.1: Suppressed sequence

      Description
      NR_145979.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
    5. NR_145980.1: Suppressed sequence

      Description
      NR_145980.1: This RefSeq was removed because it is now thought that this gene does encode a protein.