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    Tmem168 transmembrane protein 168 [ Mus musculus (house mouse) ]

    Gene ID: 101118, updated on 23-Jun-2021

    Summary

    Official Symbol
    Tmem168provided by MGI
    Official Full Name
    transmembrane protein 168provided by MGI
    Primary source
    MGI:MGI:1921794
    See related
    Ensembl:ENSMUSG00000029569
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI462344; AI504145; 5730526F17Rik; 8430437G11Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 7.0), bladder adult (RPKM 6.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Tmem168 in Genome Data Viewer
    Location:
    6; 6 A1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (13580688..13608097, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (13580689..13608098, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (13530689..13558063, complement)

    Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein S10 pseudogene Neighboring gene predicted gene, 25737 Neighboring gene base methyltransferase of 25S rRNA 2 Neighboring gene predicted gene, 53312

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in transport vesicle ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028990.5NP_083266.1  transmembrane protein 168

      See identical proteins and their annotated locations for NP_083266.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer, protein-coding transcript.
      Source sequence(s)
      AC139884, AK051532
      Consensus CDS
      CCDS19915.1
      UniProtKB/Swiss-Prot
      Q91VX9
      Related
      ENSMUSP00000031554.3, ENSMUST00000031554.9

    RNA

    1. NR_155435.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
      Source sequence(s)
      AC139884
      Related
      ENSMUST00000149123.3

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000072.7 Reference GRCm39 C57BL/6J

      Range
      13580688..13608097 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006504953.5XP_006505016.1  transmembrane protein 168 isoform X1

      See identical proteins and their annotated locations for XP_006505016.1

      UniProtKB/Swiss-Prot
      Q91VX9
    2. XM_006504952.5XP_006505015.1  transmembrane protein 168 isoform X1

      See identical proteins and their annotated locations for XP_006505015.1

      UniProtKB/Swiss-Prot
      Q91VX9

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001347059.1: Suppressed sequence

      Description
      NM_001347059.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.
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