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    Tmem168 transmembrane protein 168 [ Mus musculus (house mouse) ]

    Gene ID: 101118, updated on 12-Aug-2018

    Summary

    Official Symbol
    Tmem168provided by MGI
    Official Full Name
    transmembrane protein 168provided by MGI
    Primary source
    MGI:MGI:1921794
    See related
    Ensembl:ENSMUSG00000029569 Vega:OTTMUSG00000023860
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI462344; AI504145; 5730526F17Rik; 8430437G11Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 7.0), bladder adult (RPKM 6.0) and 28 other tissues See more
    Orthologs

    Genomic context

    See Tmem168 in Genome Data Viewer
    Location:
    6; 6 A1
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (13580689..13608222, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (13530689..13558063, complement)

    Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700016P04 gene Neighboring gene ribosomal protein S10 pseudogene Neighboring gene base methyltransferase of 25S rRNA 2 Neighboring gene predicted gene, 40354

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Gene trapped (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    transport vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    transport vesicle ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_028990.5NP_083266.1  transmembrane protein 168

      See identical proteins and their annotated locations for NP_083266.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer, protein-coding transcript.
      Source sequence(s)
      AC139884, AK051532
      Consensus CDS
      CCDS19915.1
      UniProtKB/Swiss-Prot
      Q91VX9
      Related
      ENSMUSP00000031554.2, OTTMUSP00000028215, ENSMUST00000031554.8, OTTMUST00000058284

    RNA

    1. NR_155435.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an alternate exon compared to variant 1. This variant is represented as non-coding because the predicted protein does not meet RefSeq quality criteria.
      Source sequence(s)
      AC139884

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

      Range
      13580689..13608222 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006504954.3XP_006505017.1  transmembrane protein 168 isoform X2

      Related
      ENSMUSP00000145372.1, OTTMUSP00000073623, ENSMUST00000149123.2, OTTMUST00000058285
    2. XM_006504953.3XP_006505016.1  transmembrane protein 168 isoform X1

      See identical proteins and their annotated locations for XP_006505016.1

      UniProtKB/Swiss-Prot
      Q91VX9
    3. XM_006504952.3XP_006505015.1  transmembrane protein 168 isoform X1

      See identical proteins and their annotated locations for XP_006505015.1

      UniProtKB/Swiss-Prot
      Q91VX9

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001347059.1: Suppressed sequence

      Description
      NM_001347059.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.
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