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    atxn2 ataxin 2 [ Takifugu rubripes (torafugu) ]

    Gene ID: 101062795, updated on 8-Mar-2024

    Summary

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    Gene symbol
    atxn2
    Gene description
    ataxin 2
    See related
    Ensembl:ENSTRUG00000016801
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Takifugu rubripes
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
    Orthologs
    human zebrafish all
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    Genomic context

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    See atxn2 in Genome Data Viewer
    Location:
    chromosome: 21
    Exon count:
    26
    Annotation release Status Assembly Chr Location
    103 current fTakRub1.2 (GCF_901000725.2) 21 NC_042305.1 (10324918..10339284, complement)
    101 previous assembly FUGU5 (GCF_000180615.1) 21 NC_018910.1 (6310996..6325347, complement)

    Chromosome 21 - NC_042305.1Genomic Context describing neighboring genes Neighboring gene PH domain containing endocytic trafficking adaptor 1 Neighboring gene SH2B adaptor protein 3 Neighboring gene MAPK activated protein kinase 5 Neighboring gene osteoclast stimulating factor 1 Neighboring gene nicotinamide riboside kinase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in stress granule assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasmic stress granule IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ataxin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference fTakRub1.2 Primary Assembly

    Genomic

    1. NC_042305.1 Reference fTakRub1.2 Primary Assembly

      Range
      10324918..10339284 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011615518.2 → XP_011613820.2  ataxin-2 isoform X10

      UniProtKB/TrEMBL
      A0A3B5JZB5

    2. XM_011615516.2 → XP_011613818.2  ataxin-2 isoform X6

      UniProtKB/TrEMBL
      A0A3B5JZB5
      Conserved Domains (5) summary
      PHA03247
      Location:411 → 958
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:151 → 293
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:206 → 267
      LsmAD; LsmAD domain
      pfam09770
      Location:722 → 958
      PAT1; Topoisomerase II-associated protein PAT1
      pfam14438
      Location:56 → 132
      SM-ATX; Ataxin 2 SM domain

    3. XM_029830292.1 → XP_029686152.1  ataxin-2 isoform X11

      UniProtKB/TrEMBL
      A0A3B5JZB5

    4. XM_011615511.2 → XP_011613813.2  ataxin-2 isoform X3

      UniProtKB/TrEMBL
      A0A3B5JZB5

    5. XM_029830290.1 → XP_029686150.1  ataxin-2 isoform X8

      UniProtKB/TrEMBL
      A0A3B5JZB5

    6. XM_011615517.2 → XP_011613819.2  ataxin-2 isoform X7

      UniProtKB/TrEMBL
      A0A3B5JZB5, H2V1F9
      Related
      ENSTRUP00000043039.3, ENSTRUT00000043184.3
      Conserved Domains (4) summary
      PHA03247
      Location:288 → 876
      PHA03247; large tegument protein UL36; Provisional
      pfam06741
      Location:206 → 267
      LsmAD; LsmAD domain
      pfam09770
      Location:811 → 999
      PAT1; Topoisomerase II-associated protein PAT1
      pfam14438
      Location:56 → 132
      SM-ATX; Ataxin 2 SM domain

    7. XM_011615513.2 → XP_011613815.2  ataxin-2 isoform X5

      UniProtKB/TrEMBL
      A0A3B5JZB5

    8. XM_011615512.2 → XP_011613814.2  ataxin-2 isoform X4

      UniProtKB/TrEMBL
      A0A3B5JZB5

    9. XM_011615510.2 → XP_011613812.2  ataxin-2 isoform X2

      UniProtKB/TrEMBL
      A0A3B5JZB5

    10. XM_011615509.2 → XP_011613811.2  ataxin-2 isoform X1

      UniProtKB/TrEMBL
      A0A3B5JZB5
      Conserved Domains (5) summary
      PHA03247
      Location:411 → 958
      PHA03247; large tegument protein UL36; Provisional
      COG5180
      Location:151 → 293
      PBP1; PAB1-binding protein PBP1, interacts with poly(A)-binding protein [RNA processing and modification]
      pfam06741
      Location:206 → 267
      LsmAD; LsmAD domain
      pfam09770
      Location:722 → 958
      PAT1; Topoisomerase II-associated protein PAT1
      pfam14438
      Location:56 → 132
      SM-ATX; Ataxin 2 SM domain

    11. XM_011615515.2 → XP_011613817.2  ataxin-2 isoform X9

      UniProtKB/TrEMBL
      A0A3B5JZB5
      Related
      ENSTRUP00000048481.2, ENSTRUT00000051179.2
    Nucleotide Protein
    Heading Accession and Version

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