U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LINC00393 long intergenic non-protein coding RNA 393 [ Homo sapiens (human) ]

    Gene ID: 100874156, updated on 22-Oct-2024

    Summary

    Official Symbol
    LINC00393provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 393provided by HGNC
    Primary source
    HGNC:HGNC:42721
    See related
    Ensembl:ENSG00000224853 AllianceGenome:HGNC:42721
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See LINC00393 in Genome Data Viewer
    Location:
    13q22.1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (73545901..73661903, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (72767532..72883507, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (74120038..74236040, complement)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene MARK2 pseudogene 12 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:74096615-74097116 Neighboring gene uncharacterized LOC105377816 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:74097117-74097616 Neighboring gene uncharacterized LOC128966561 Neighboring gene uncharacterized LOC105370256 Neighboring gene long intergenic non-protein coding RNA 392 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:74214267-74214908 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:74214909-74215550 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr13:74289066-74290265 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:74305638-74306208 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:74340128-74340628 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr13:74341622-74342257 Neighboring gene KLF transcription factor 12 Neighboring gene uncharacterized LOC124903182 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33299 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33300 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33301 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_33303 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7817 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:74609849-74610779 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr13:74610780-74611709 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7818 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7819 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 5399 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 7820 Neighboring gene NANOG hESC enhancer GRCh37_chr13:74749652-74750153 Neighboring gene Sharpr-MPRA regulatory region 11269 Neighboring gene HNF1 motif-containing MPRA enhancer 52 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr13:74815323-74815876 Neighboring gene long intergenic non-protein coding RNA 402

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_184171.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL160032
      Related
      ENST00000792753.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      73545901..73661903 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      72767532..72883507 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)