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    Rita1 RBPJ interacting and tubulin associated 1 [ Mus musculus (house mouse) ]

    Gene ID: 100764, updated on 31-Jan-2019

    Summary

    Official Symbol
    Rita1provided by MGI
    Official Full Name
    RBPJ interacting and tubulin associated 1provided by MGI
    Primary source
    MGI:MGI:1922021
    See related
    Ensembl:ENSMUSG00000029600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rita; C86297; AI853657; 1110008J03Rik
    Expression
    Ubiquitous expression in colon adult (RPKM 13.5), stomach adult (RPKM 12.7) and 28 other tissues See more
    Orthologs

    Genomic context

    See Rita1 in Genome Data Viewer
    Location:
    5; 5 F
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 5 NC_000071.6 (120609058..120612589, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (121059072..121062578, complement)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene IQ motif containing D Neighboring gene predicted gene, 38700 Neighboring gene predicted gene, 38465 Neighboring gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 54 Neighboring gene cilia and flagella associated protein 73 Neighboring gene RAS protein activator like 1 (GAP1 like)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    tubulin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    tubulin binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    Notch signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    negative regulation of Notch signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    negative regulation of Notch signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    nervous system development IEA
    Inferred from Electronic Annotation
    more info
     
    nuclear export IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nuclear export ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    cell ISO
    Inferred from Sequence Orthology
    more info
     
    centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    RBPJ-interacting and tubulin-associated protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029096.3NP_083372.1  RBPJ-interacting and tubulin-associated protein 1

      See identical proteins and their annotated locations for NP_083372.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC125183, AI850520, AK003581
      Consensus CDS
      CCDS51635.1
      UniProtKB/Swiss-Prot
      Q9D1H0
      Related
      ENSMUSP00000031599.2, ENSMUST00000031599.8
      Conserved Domains (1) summary
      pfam17066
      Location:1253
      RITA; RBPJ-interacting and tubulin associated protein
    2. NM_133908.1NP_598669.1  RBPJ-interacting and tubulin-associated protein 1

      See identical proteins and their annotated locations for NP_598669.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC125183, CX239969
      Consensus CDS
      CCDS51635.1
      UniProtKB/Swiss-Prot
      Q9D1H0
      Related
      ENSMUSP00000136946.1, ENSMUST00000177800.7
      Conserved Domains (1) summary
      pfam17066
      Location:1253
      RITA; RBPJ-interacting and tubulin associated protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p4 C57BL/6J

      Range
      120609058..120612589 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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