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    Rita1 RBPJ interacting and tubulin associated 1 [ Mus musculus (house mouse) ]

    Gene ID: 100764, updated on 23-Jun-2021

    Summary

    Official Symbol
    Rita1provided by MGI
    Official Full Name
    RBPJ interacting and tubulin associated 1provided by MGI
    Primary source
    MGI:MGI:1922021
    See related
    Ensembl:ENSMUSG00000029600
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Rita; C86297; AI853657; 1110008J03Rik
    Expression
    Ubiquitous expression in colon adult (RPKM 13.5), stomach adult (RPKM 12.7) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Rita1 in Genome Data Viewer
    Location:
    5; 5 F
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (120747123..120750654, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (120609058..120612589, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (121059072..121062578, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene solute carrier family 8 (sodium/lithium/calcium exchanger), member B1 Neighboring gene two pore channel 1 Neighboring gene IQ motif containing D Neighboring gene DEAD box helicase 54 Neighboring gene cilia and flagella associated protein 73 Neighboring gene RAS protein activator like 1 (GAP1 like)

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables tubulin binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    enables tubulin binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    acts_upstream_of_or_within Notch signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in Notch signaling pathway IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in negative regulation of Notch signaling pathway IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in negative regulation of Notch signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within nervous system development IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in nuclear export IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in nuclear export ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in centrosome ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleus ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    RBPJ-interacting and tubulin-associated protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_029096.3NP_083372.1  RBPJ-interacting and tubulin-associated protein 1

      See identical proteins and their annotated locations for NP_083372.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC125183, AI850520, AK003581
      Consensus CDS
      CCDS51635.1
      UniProtKB/Swiss-Prot
      Q9D1H0
      Related
      ENSMUSP00000031599.3, ENSMUST00000031599.9
      Conserved Domains (1) summary
      pfam17066
      Location:1253
      RITA; RBPJ-interacting and tubulin associated protein
    2. NM_133908.1NP_598669.1  RBPJ-interacting and tubulin-associated protein 1

      See identical proteins and their annotated locations for NP_598669.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Variants 1 and 2 encode the same protein.
      Source sequence(s)
      AC125183, CX239969
      Consensus CDS
      CCDS51635.1
      UniProtKB/Swiss-Prot
      Q9D1H0
      Related
      ENSMUSP00000136946.2, ENSMUST00000177800.8
      Conserved Domains (1) summary
      pfam17066
      Location:1253
      RITA; RBPJ-interacting and tubulin associated protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      120747123..120750654 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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