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    Noc4l NOC4 like [ Mus musculus (house mouse) ]

    Gene ID: 100608, updated on 9-Dec-2024

    Summary

    Official Symbol
    Noc4lprovided by MGI
    Official Full Name
    NOC4 likeprovided by MGI
    Primary source
    MGI:MGI:2140843
    See related
    Ensembl:ENSMUSG00000033294 AllianceGenome:MGI:2140843
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to be involved in ribosome biogenesis. Predicted to be located in nucleoplasm. Predicted to be part of Noc4p-Nop14p complex and small-subunit processome. Predicted to be active in nucleolus. Is expressed in several structures, including alimentary system; central nervous system; early conceptus; genitourinary system; and immune system. Orthologous to human NOC4L (nucleolar complex associated 4 homolog). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in liver E14.5 (RPKM 36.6), ovary adult (RPKM 34.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Noc4l in Genome Data Viewer
    Location:
    5 F; 5 53.69 cM
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (110796285..110801248, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (110648419..110653382, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A630023P12 gene Neighboring gene polypeptide N-acetylgalactosaminyltransferase 9 Neighboring gene STARR-seq mESC enhancer starr_13961 Neighboring gene DEAD box helicase 51 Neighboring gene microRNA 7026 Neighboring gene E1A binding protein p400

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (2)  1 citation

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • MGC28606

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of Noc4p-Nop14p complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nuclear membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    part_of small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
     

    General protein information

    Preferred Names
    nucleolar complex protein 4 homolog
    Names
    NOC4 protein homolog
    NOC4-like protein
    nucleolar complex associated 4 homolog
    nucleolar complex-associated protein 4-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_153570.2NP_705798.2  nucleolar complex protein 4 homolog

      See identical proteins and their annotated locations for NP_705798.2

      Status: PROVISIONAL

      Source sequence(s)
      AK052601
      Consensus CDS
      CCDS19527.1
      UniProtKB/Swiss-Prot
      Q8BHY2, Q8R1F7
      UniProtKB/TrEMBL
      Q3T9T2, Q3UKH4
      Related
      ENSMUSP00000038263.6, ENSMUST00000042147.6
      Conserved Domains (1) summary
      pfam03914
      Location:305453
      CBF; CBF/Mak21 family

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      110796285..110801248 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)