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    Noc4l NOC4 like [ Mus musculus (house mouse) ]

    Gene ID: 100608, updated on 23-Jun-2021

    Summary

    Official Symbol
    Noc4lprovided by MGI
    Official Full Name
    NOC4 likeprovided by MGI
    Primary source
    MGI:MGI:2140843
    See related
    Ensembl:ENSMUSG00000033294
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AI326906
    Expression
    Ubiquitous expression in liver E14.5 (RPKM 36.6), ovary adult (RPKM 34.0) and 28 other tissues See more
    Orthologs
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    Genomic context

    See Noc4l in Genome Data Viewer
    Location:
    5; 5 F
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (110796285..110801248, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (110648419..110653382, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (111077438..111082401, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A630023P12 gene Neighboring gene polypeptide N-acetylgalactosaminyltransferase 9 Neighboring gene DEAD box helicase 51 Neighboring gene microRNA 7026 Neighboring gene E1A binding protein p400

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2)  1 citation
    • Endonuclease-mediated (1) 

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Clone Names

    • MGC28606

    Gene Ontology Provided by MGI

    Process Evidence Code Pubs
    involved_in ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of Noc4p-Nop14p complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    is_active_in nucleolus IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in nucleolus ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    part_of small-subunit processome IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 

    General protein information

    Preferred Names
    nucleolar complex protein 4 homolog
    Names
    NOC4 protein homolog
    NOC4-like protein
    nucleolar complex associated 4 homolog
    nucleolar complex-associated protein 4-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_153570.2NP_705798.2  nucleolar complex protein 4 homolog

      See identical proteins and their annotated locations for NP_705798.2

      Status: PROVISIONAL

      Source sequence(s)
      AK052601
      Consensus CDS
      CCDS19527.1
      UniProtKB/Swiss-Prot
      Q8BHY2
      Related
      ENSMUSP00000038263.6, ENSMUST00000042147.6
      Conserved Domains (1) summary
      pfam03914
      Location:305453
      CBF; CBF/Mak21 family

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      110796285..110801248 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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