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    smarca4b SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4b [ Danio rerio (zebrafish) ]

    Gene ID: 100535713, updated on 28-Apr-2025

    Summary

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    Official Symbol
    smarca4bprovided by ZNC
    Official Full Name
    SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4bprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-140106-1
    See related
    Ensembl:ENSDARG00000104339 AllianceGenome:ZFIN:ZDB-GENE-140106-1
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Is expressed in telencephalon. [provided by Alliance of Genome Resources, Apr 2025]
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    all
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    Genomic context

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    See smarca4b in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (83856..101373)
    105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (65805..76014)

    Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene sosondowah ankyrin repeat domain family Cb Neighboring gene crystallin, gamma M4 Neighboring gene low density lipoprotein receptor b Neighboring gene adaptor related protein complex 1 subunit mu 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Gene duplication followed by exon structure divergence substitutes for alternative splicing in zebrafish. Lambert MJ, et al. Gene, 2014 Aug 10. PMID 24942242
    2. Comprehensive expression map of transcription regulators in the adult zebrafish telencephalon reveals distinct neurogenic niches. Diotel N, et al. J Comp Neurol, 2015 Jun 1. PMID 25556858, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    transcription activator BRG1
    Names
    zmp:0000001041

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007117.7 Reference GRCz11 Primary Assembly

      Range
      83856..101373
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021476960.2 → XP_021332635.2  transcription activator BRG1

      UniProtKB/TrEMBL
      A0A8M9QFL5
      Related
      ENSDARP00000135242.1, ENSDART00000162145.2
    Nucleotide Protein Strain
    Heading Accession and Version

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