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    Rell1 RELT-like 1 [ Mus musculus (house mouse) ]

    Gene ID: 100532, updated on 6-Sep-2021

    Summary

    Official Symbol
    Rell1provided by MGI
    Official Full Name
    RELT-like 1provided by MGI
    Primary source
    MGI:MGI:2140767
    See related
    Ensembl:ENSMUSG00000047881
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AA536743
    Expression
    Ubiquitous expression in placenta adult (RPKM 8.9), adrenal adult (RPKM 7.4) and 27 other tissues See more
    Orthologs
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    Genomic context

    See Rell1 in Genome Data Viewer
    Location:
    5; 5 C3.1
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    109 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (64046074..64126363, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (63889337..63969020, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (64300137..64360136, complement)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 30837 Neighboring gene NACHT and WD repeat domain containing 2 Neighboring gene hematological and neurological expressed 1 protein pseudogene Neighboring gene RIKEN cDNA 0610040J01 gene Neighboring gene RIKEN cDNA 5830416I19 gene Neighboring gene predicted gene, 25608

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in positive regulation of p38MAPK cascade IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    involved_in positive regulation of p38MAPK cascade ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    located_in integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in microtubule cytoskeleton ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    PubMed 
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145923.4NP_666035.2  RELT-like protein 1 precursor

      See identical proteins and their annotated locations for NP_666035.2

      Status: PROVISIONAL

      Source sequence(s)
      AK140108
      Consensus CDS
      CCDS39093.1
      UniProtKB/Swiss-Prot
      Q8K2J7
      Related
      ENSMUSP00000118125.2, ENSMUST00000154169.4
      Conserved Domains (1) summary
      pfam12606
      Location:5991
      RELT; tumor necrosis factor receptor superfamily member 19

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      64046074..64126363 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006503621.5XP_006503684.1  RELT-like protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006503684.1

      UniProtKB/Swiss-Prot
      Q8K2J7
      Conserved Domains (1) summary
      pfam12606
      Location:5991
      RELT; tumor necrosis factor receptor superfamily member 19
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