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    SOX21-AS1 SOX21 antisense divergent transcript 1 [ Homo sapiens (human) ]

    Gene ID: 100507533, updated on 17-Sep-2024

    Summary

    Official Symbol
    SOX21-AS1provided by HGNC
    Official Full Name
    SOX21 antisense divergent transcript 1provided by HGNC
    Primary source
    HGNC:HGNC:39807
    See related
    Ensembl:ENSG00000227640 AllianceGenome:HGNC:39807
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in stomach (RPKM 6.7), skin (RPKM 3.6) and 3 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See SOX21-AS1 in Genome Data Viewer
    Location:
    13q32.1
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 13 NC_000013.11 (94712716..94715945)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 13 NC_060937.1 (93916221..93919442)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (95364970..95368199)

    Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:95353695-95354372 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:95354373-95355048 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:95357234-95357738 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:95357739-95358243 Neighboring gene VISTA enhancer hs488 Neighboring gene long intergenic non-protein coding RNA 391 Neighboring gene RNA, 7SL, cytoplasmic 585, pseudogene Neighboring gene uncharacterized LOC112268114 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr13:95365523-95366024 Neighboring gene SRY-box transcription factor 21 Neighboring gene uncharacterized LOC101927284 Neighboring gene ribosomal protein L21 pseudogene 112 Neighboring gene bromodomain containing 7 pseudogene 5

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Other Names

    • SOX21 antisense RNA 1 (head to head)
    • SOX21 antisense RNA 1 (non-protein coding)

    Clone Names

    • FLJ30897

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_046514.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL137061
      Related
      ENST00000438290.2

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000013.11 Reference GRCh38.p14 Primary Assembly

      Range
      94712716..94715945
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060937.1 Alternate T2T-CHM13v2.0

      Range
      93916221..93919442
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)