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    Gm20098 predicted gene, 20098 [ Mus musculus (house mouse) ]

    Gene ID: 100504169, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm20098provided by MGI
    Official Full Name
    predicted gene, 20098provided by MGI
    Primary source
    MGI:MGI:5012283
    See related
    Ensembl:ENSMUSG00000117175 AllianceGenome:MGI:5012283
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Restricted expression toward thymus adult (RPKM 1.4) See more
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    Genomic context

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    See Gm20098 in Genome Data Viewer
    Location:
    17 C; 17 27.07 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (52189755..52272285)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (51882727..51965257)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene special AT-rich sequence binding protein 1 Neighboring gene STARR-seq mESC enhancer starr_42810 Neighboring gene STARR-positive B cell enhancer ABC_E10962 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:51972530-51972717 Neighboring gene STARR-seq mESC enhancer starr_42811 Neighboring gene STARR-seq mESC enhancer starr_42812 Neighboring gene predicted gene 6934 Neighboring gene predicted gene, 54011 Neighboring gene STARR-positive B cell enhancer mm9_chr17:52043120-52043421 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:52043404-52043557 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:52095713-52095914 Neighboring gene STARR-positive B cell enhancer mm9_chr17:52138472-52138772 Neighboring gene FCF1 small subunit processome component homolog pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E5619 Neighboring gene STARR-positive B cell enhancer ABC_E9959 Neighboring gene predicted gene, 19585

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_045095.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC154796, AC161258
      Related
      ENSMUST00000233779.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      52189755..52272285
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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