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    PRR20G proline rich 20G [ Homo sapiens (human) ]

    Gene ID: 100419008, updated on 17-Sep-2024

    Summary

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    Official Symbol
    PRR20Gprovided by HGNC
    Official Full Name
    proline rich 20Gprovided by HGNC
    Primary source
    HGNC:HGNC:53837
    See related
    Ensembl:ENSG00000239620 AllianceGenome:HGNC:53837
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Orthologs
    all
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    Genomic context

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    Location:
    3q21.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (127283783..127288046, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (130016264..130020529, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (127002626..127006889, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 1047, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126983520-126984020 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126984021-126984521 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:126992945-126993459 Neighboring gene uncharacterized LOC124906281 Neighboring gene NANOG hESC enhancer GRCh37_chr3:126995796-126996297 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:127007005-127007506 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20455 Neighboring gene long intergenic non-protein coding RNA 2016 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:127056419-127057078 Neighboring gene uncharacterized LOC105374094 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:127110535-127111346 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:127113684-127114550 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:127121540-127122739 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 20456 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:127171391-127171911 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 14686 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:127184463-127184964 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:127184965-127185464 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:127191951-127192452 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:127192453-127192952 Neighboring gene H3K27ac hESC enhancer GRCh37_chr3:127212327-127213012 Neighboring gene long intergenic non-protein coding RNA 1471 Neighboring gene long intergenic non-protein coding RNA 2034

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    General gene information

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    Homology

    General protein information

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    Preferred Names
    proline-rich protein 20G
    Names
    proline rich 20B pseudogene
    proline rich 20B-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001362810.2 → NP_001349739.1  proline-rich protein 20G

      Status: VALIDATED

      Source sequence(s)
      AC133681
      Consensus CDS
      CCDS93365.1
      UniProtKB/Swiss-Prot
      P0DPQ3
      Related
      ENSP00000497409.1, ENST00000465482.3
      Conserved Domains (1) summary
      pfam15708
      Location:1 → 210
      PRR20; Proline-rich protein family 20

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      127283783..127288046 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      130016264..130020529 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_025618.1: Suppressed sequence

      Description
      NG_025618.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0DPQ3.1 GenPept UniProtKB/Swiss-Prot:P0DPQ3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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