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    Bsdc1 BSD domain containing 1 [ Mus musculus (house mouse) ]

    Gene ID: 100383, updated on 31-Jan-2019

    Summary

    Official Symbol
    Bsdc1provided by MGI
    Official Full Name
    BSD domain containing 1provided by MGI
    Primary source
    MGI:MGI:1913466
    See related
    Ensembl:ENSMUSG00000040859
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    AW011758; 1110063F24Rik
    Expression
    Ubiquitous expression in liver E14.5 (RPKM 21.3), liver E14 (RPKM 19.1) and 28 other tissues See more
    Orthologs

    Genomic context

    See Bsdc1 in Genome Data Viewer
    Location:
    4; 4 D2.2
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (129461679..129488498)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (129138923..129165679)

    Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA C330020E22 gene Neighboring gene zinc finger and BTB domain containing 8b Neighboring gene family with sequence similarity 229, member A Neighboring gene testis-specific serine kinase 3

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    BSD domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_133889.2NP_598650.2  BSD domain-containing protein 1

      See identical proteins and their annotated locations for NP_598650.2

      Status: PROVISIONAL

      Source sequence(s)
      BC049111
      Consensus CDS
      CCDS18692.1
      UniProtKB/Swiss-Prot
      Q80Y55
      Related
      ENSMUSP00000048742.8, ENSMUST00000048162.9
      Conserved Domains (1) summary
      pfam03909
      Location:146202
      BSD; BSD domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

      Range
      129461679..129488498
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006502630.3XP_006502693.1  BSD domain-containing protein 1 isoform X1

      See identical proteins and their annotated locations for XP_006502693.1

      Conserved Domains (1) summary
      pfam03909
      Location:126182
      BSD; BSD domain

    Reference GRCm38.p4 NOD/MrkTac

    Genomic

    1. NT_187023.1 Reference GRCm38.p4 NOD/MrkTac

      Range
      1063774..1090527
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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