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    sema3b semaphorin 3B [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100151737, updated on 8-Mar-2024

    Summary

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    Official Symbol
    sema3bprovided by Xenbase
    Official Full Name
    semaphorin 3Bprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-921561
    See related
    Ensembl:ENSXETG00000007320
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    sema; sema5; semaa; semav; luca-1
    Orthologs
    human mouse all
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    Genomic context

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    See sema3b in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 4 NC_030680.2 (127046762..127073260)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 4 NC_030680.1 (116597501..116624001)

    Chromosome 4 - NC_030680.2Genomic Context describing neighboring genes Neighboring gene solute carrier family 38 member 3 Neighboring gene guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 2 Neighboring gene interferon-related developmental regulator 2 Neighboring gene N(alpha)-acetyltransferase 80, NatH catalytic subunit

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular component organization IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    semaphorin-3B
    Names
    sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127436.1 → NP_001120908.1  semaphorin-3B precursor

      See identical proteins and their annotated locations for NP_001120908.1

      Status: PROVISIONAL

      Source sequence(s)
      BC166183
      UniProtKB/TrEMBL
      A0A6I8R4X0, B2GU89
      Related
      ENSXETP00000015948.3, ENSXETT00000015948.5
      Conserved Domains (3) summary
      cd11250
      Location:43 → 514
      Sema_3B; The Sema domain, a protein interacting module, of semaphorin 3B (Sema3B)
      smart00423
      Location:513 → 550
      PSI; domain found in Plexins, Semaphorins and Integrins
      cl11960
      Location:575 → 663
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030680.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      127046762..127073260
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_012964329.3 → XP_012819783.1  semaphorin-3B isoform X1

      See identical proteins and their annotated locations for XP_012819783.1

      UniProtKB/TrEMBL
      A0A6I8R4X0, A0A7D9NKH4
      Conserved Domains (4) summary
      cd11250
      Location:43 → 514
      Sema_3B; The Sema domain, a protein interacting module, of semaphorin 3B (Sema3B)
      smart00423
      Location:513 → 550
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:572 → 578
      Ig; Ig strand A [structural motif]
      cl11960
      Location:572 → 663
      Ig; Immunoglobulin domain

    2. XM_031899870.1 → XP_031755730.1  semaphorin-3B isoform X1

      UniProtKB/TrEMBL
      A0A6I8R4X0, A0A7D9NKH4
      Conserved Domains (4) summary
      cd11250
      Location:43 → 514
      Sema_3B; The Sema domain, a protein interacting module, of semaphorin 3B (Sema3B)
      smart00423
      Location:513 → 550
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00096
      Location:572 → 578
      Ig; Ig strand A [structural motif]
      cl11960
      Location:572 → 663
      Ig; Immunoglobulin domain
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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