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    RNU4ATAC RNA, U4atac small nuclear (U12-dependent splicing) [ Homo sapiens (human) ]

    Gene ID: 100151683, updated on 11-Jun-2021

    Summary

    Official Symbol
    RNU4ATACprovided by HGNC
    Official Full Name
    RNA, U4atac small nuclear (U12-dependent splicing)provided by HGNC
    Primary source
    HGNC:HGNC:34016
    See related
    Ensembl:ENSG00000264229 MIM:601428
    Gene type
    snRNA
    RefSeq status
    REVIEWED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LWS; RFMN; TALS; MOPD1; U4ATAC; RNU4ATAC1
    Summary
    The small nuclear RNA (snRNA) encoded by this gene is part of the U12-dependent minor spliceosome complex. In addition to the encoded RNA, this ribonucleoprotein complex consists of U11, U12, U5, and U6atac snRNAs. The U12-dependent spliceosome acts on approximately 700 specific introns in the human genome. Defects in this gene are a cause of microcephalic osteodysplastic primordial dwarfism type 1 (MOPD). [provided by RefSeq, Jul 2011]
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    Genomic context

    See RNU4ATAC in Genome Data Viewer
    Location:
    2q14.2
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    109.20210514 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (121530880..121531009)
    105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (122288456..122288585)

    Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene transcription factor CP2 like 1 Neighboring gene ribosomal protein S17 pseudogene 7 Neighboring gene cytoplasmic linker associated protein 1 Neighboring gene CLASP1 antisense RNA 1 Neighboring gene NIFK antisense RNA 1 Neighboring gene ribosomal protein L12 pseudogene 15 Neighboring gene nucleophosmin 1 pseudogene 32

    Genomic regions, transcripts, and products

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables U6atac snRNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables pre-mRNA 5'-splice site binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    involved_in mRNA 5'-splice site recognition IEA
    Inferred from Electronic Annotation
    more info
     
    involved_in spliceosomal tri-snRNP complex assembly IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    part_of U4atac snRNP IEA
    Inferred from Electronic Annotation
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_029832.1 RefSeqGene

      Range
      5001..5130
      Download
      GenBank, FASTA, Sequence Viewer (Graphics), LRG_1202

    RNA

    1. NR_023343.1 RNA Sequence

      Status: REVIEWED

      Source sequence(s)
      AC012447
      Related
      ENST00000580972.1

    RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p13 Primary Assembly

    Genomic

    1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

      Range
      121530880..121531009
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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