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    CXorf49 chromosome X open reading frame 49 [ Homo sapiens (human) ]

    Gene ID: 100130361, updated on 10-Oct-2023

    Summary

    Official Symbol
    CXorf49provided by HGNC
    Official Full Name
    chromosome X open reading frame 49provided by HGNC
    Primary source
    HGNC:HGNC:30891
    See related
    Ensembl:ENSG00000215115 AllianceGenome:HGNC:30891
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CXorf49B
    Expression
    Restricted expression toward testis (RPKM 3.0) See more
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    Genomic context

    See CXorf49 in Genome Data Viewer
    Location:
    Xq13.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (71714371..71718285, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (70147706..70151620, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (70934221..70938135, complement)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene chromosome X open reading frame 49-like Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chrX:70888661-70889860 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 20899 Neighboring gene long intergenic non-protein coding RNA 891 Neighboring gene cytochrome c oxidase subunit NDUFA4-like Neighboring gene cytochrome c oxidase subunit NDUFA4-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General protein information

    Preferred Names
    uncharacterized protein CXorf49

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001145140.2NP_001138612.1  uncharacterized protein CXorf49

      See identical proteins and their annotated locations for NP_001138612.1

      Status: VALIDATED

      Source sequence(s)
      BX276092
      Consensus CDS
      CCDS75991.1
      UniProtKB/Swiss-Prot
      A8MYA2
      Related
      ENSP00000480355.1, ENST00000535490.3
      Conserved Domains (1) summary
      pfam15483
      Location:81506
      DUF4641; Domain of unknown function (DUF4641)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      71714371..71718285 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      70147706..70151620 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)