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    FAM236A family with sequence similarity 236 member A [ Homo sapiens (human) ]

    Gene ID: 100129407, updated on 10-Oct-2023

    Summary

    Official Symbol
    FAM236Aprovided by HGNC
    Official Full Name
    family with sequence similarity 236 member Aprovided by HGNC
    Primary source
    HGNC:HGNC:44268
    See related
    Ensembl:ENSG00000275520 AllianceGenome:HGNC:44268
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LINC00684; DMRTC1-AS1
    Expression
    Restricted expression toward testis (RPKM 50.5) See more
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    Genomic context

    Location:
    Xq13.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (72938206..72938958)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (71371716..71372468)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (72158046..72158798)

    Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene DMRT like family C1B Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:72027355-72027855 Neighboring gene family with sequence similarity 236 member D Neighboring gene DMRT like family C1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:72132634-72133134 Neighboring gene family with sequence similarity 236 member C Neighboring gene family with sequence similarity 226 member A Neighboring gene H3K4me1 hESC enhancer GRCh37_chrX:72179367-72179868 Neighboring gene PABPC1L2B antisense RNA 1 (head to head)

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General protein information

    Preferred Names
    protein FAM236A
    Names
    DMRTC1 antisense RNA 1 (non-protein coding)
    family with sequence similarity 235 member A
    long intergenic non-protein coding RNA 684

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001348070.2NP_001334999.1  protein FAM236A isoform 1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC234776
      Consensus CDS
      CCDS87765.1
      UniProtKB/Swiss-Prot
      A0A1B0GUQ0, A0A1B0GV22
      Related
      ENSP00000490343.2, ENST00000611003.2
    2. NM_001348071.2NP_001335000.1  protein FAM236A isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC234776
      Consensus CDS
      CCDS87766.1
      UniProtKB/TrEMBL
      A0A1X7SCG6
      Related
      ENSP00000490197.1, ENST00000593662.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

      Range
      72938206..72938958
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060947.1 Alternate T2T-CHM13v2.0

      Range
      71371716..71372468
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_034116.1: Suppressed sequence

      Description
      NR_034116.1: This RefSeq was removed because it is now thought that this gene does encode a protein.
    2. NR_034117.1: Suppressed sequence

      Description
      NR_034117.1: This RefSeq was permanently suppressed because it was based on sequence from the wrong strand.
    3. NR_120499.1: Suppressed sequence

      Description
      NR_120499.1: This RefSeq was removed because it is now thought that this gene does encode a protein.