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    FAM229A family with sequence similarity 229 member A [ Homo sapiens (human) ]

    Gene ID: 100128071, updated on 17-Jun-2024

    Summary

    Official Symbol
    FAM229Aprovided by HGNC
    Official Full Name
    family with sequence similarity 229 member Aprovided by HGNC
    Primary source
    HGNC:HGNC:44652
    See related
    Ensembl:ENSG00000225828 AllianceGenome:HGNC:44652
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 6.5), fat (RPKM 1.5) and 13 other tissues See more
    Orthologs
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    Genomic context

    See FAM229A in Genome Data Viewer
    Location:
    1p35.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (32361270..32362485, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (32219185..32220400, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (32826871..32828086, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 592 Neighboring gene uncharacterized LOC124903949 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 593 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:32801487-32802056 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 686 Neighboring gene MARCKS like 1 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:32803079-32803207 Neighboring gene uncharacterized LOC105378629 Neighboring gene Sharpr-MPRA regulatory region 14076 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 596 Neighboring gene uncharacterized LOC124903933 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:32818736-32819250 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 597 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 598 Neighboring gene testis specific serine kinase 3 Neighboring gene BSD domain containing 1 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:32859083-32859780 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:32859781-32860476

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001167676.2NP_001161148.1  protein FAM229A

      See identical proteins and their annotated locations for NP_001161148.1

      Status: VALIDATED

      Source sequence(s)
      AL109945
      Consensus CDS
      CCDS57985.1
      UniProtKB/Swiss-Prot
      H3BQW9
      Related
      ENSP00000455971.1, ENST00000432622.2
      Conserved Domains (1) summary
      pfam14982
      Location:59122
      UPF0731; UPF0731 family

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      32361270..32362485 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      32219185..32220400 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)