U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    kif1a kinesin family member 1A [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 100127546, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    kif1aprovided by Xenbase
    Official Full Name
    kinesin family member 1Aprovided by Xenbase
    Primary source
    Xenbase:XB-GENE-960470
    See related
    Ensembl:ENSXETG00000012138
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 5
    Exon count:
    51
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (126195713..126302394)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (122628782..122735588)

    Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene ciliary rootlet coiled-coil, rootletin family member 2 Neighboring gene alanine--glyoxylate and serine-- pyruvate aminotransferase Neighboring gene allantoinase, mitochondrial-like Neighboring gene uncharacterized LOC116411124 Neighboring gene tRNA methyltransferase 10A

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP hydrolysis activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables cytoskeletal motor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables microtubule binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables microtubule binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables microtubule motor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables plus-end-directed microtubule motor activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytoskeleton-dependent intracellular transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in microtubule-based movement IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within microtubule-based movement IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in axon IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in dendrite IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of kinesin complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in microtubule IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in microtubule IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    kinesin-like protein KIF1A
    Names
    kinesin 1a

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      126195713..126302394
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031902551.1 → XP_031758411.1  kinesin-like protein KIF1A isoform X1

      UniProtKB/TrEMBL
      A0A6I8PVH2, A0A8J1JP72

    2. XM_031902556.1 → XP_031758416.1  kinesin-like protein KIF1A isoform X6

      UniProtKB/TrEMBL
      A0A6I8PVH2, A0A8J1JP78
      Conserved Domains (6) summary
      cd00060
      Location:514 → 618
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd01233
      Location:1683 → 1785
      PH_KIFIA_KIFIB; KIFIA and KIFIB protein pleckstrin homology (PH) domain
      cd01365
      Location:4 → 361
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam12423
      Location:827 → 874
      KIF1B; Kinesin protein 1B
      pfam12473
      Location:1244 → 1408
      DUF3694; Kinesin protein
      pfam16183
      Location:358 → 537
      Kinesin_assoc; Kinesin-associated

    3. XM_031902552.1 → XP_031758412.1  kinesin-like protein KIF1A isoform X2

      UniProtKB/TrEMBL
      A0A8J1JKK7, F6USW9
      Conserved Domains (6) summary
      cd00060
      Location:514 → 618
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd01233
      Location:1703 → 1805
      PH_KIFIA_KIFIB; KIFIA and KIFIB protein pleckstrin homology (PH) domain
      cd01365
      Location:4 → 361
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam12423
      Location:827 → 874
      KIF1B; Kinesin protein 1B
      pfam12473
      Location:1244 → 1400
      DUF3694; Kinesin protein
      pfam16183
      Location:358 → 537
      Kinesin_assoc; Kinesin-associated

    4. XM_031902557.1 → XP_031758417.1  kinesin-like protein KIF1A isoform X7

      UniProtKB/TrEMBL
      A0A8J1JKL1, F6USW9
      Conserved Domains (6) summary
      cd00060
      Location:514 → 618
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd01233
      Location:1675 → 1777
      PH_KIFIA_KIFIB; KIFIA and KIFIB protein pleckstrin homology (PH) domain
      cd01365
      Location:4 → 361
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam12423
      Location:827 → 874
      KIF1B; Kinesin protein 1B
      pfam12473
      Location:1244 → 1400
      DUF3694; Kinesin protein
      pfam16183
      Location:358 → 537
      Kinesin_assoc; Kinesin-associated

    5. XM_031902553.1 → XP_031758413.1  kinesin-like protein KIF1A isoform X3

      UniProtKB/TrEMBL
      A0A6I8PVH2, A0A8J1JKL0
      Conserved Domains (6) summary
      cd00060
      Location:514 → 618
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd01233
      Location:1702 → 1804
      PH_KIFIA_KIFIB; KIFIA and KIFIB protein pleckstrin homology (PH) domain
      cd01365
      Location:4 → 361
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam12423
      Location:827 → 874
      KIF1B; Kinesin protein 1B
      pfam12473
      Location:1244 → 1399
      DUF3694; Kinesin protein
      pfam16183
      Location:358 → 537
      Kinesin_assoc; Kinesin-associated

    6. XM_031902554.1 → XP_031758414.1  kinesin-like protein KIF1A isoform X4

      UniProtKB/TrEMBL
      A0A6I8PVH2, A0A8J1JKL2
      Conserved Domains (6) summary
      cd00060
      Location:514 → 618
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd01233
      Location:1694 → 1796
      PH_KIFIA_KIFIB; KIFIA and KIFIB protein pleckstrin homology (PH) domain
      cd01365
      Location:4 → 361
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam12423
      Location:827 → 874
      KIF1B; Kinesin protein 1B
      pfam12473
      Location:1244 → 1391
      DUF3694; Kinesin protein
      pfam16183
      Location:358 → 537
      Kinesin_assoc; Kinesin-associated

    7. XM_031902558.1 → XP_031758418.1  kinesin-like protein KIF1A isoform X8

      UniProtKB/TrEMBL
      A0A6I8PVH2, A0A8J1JKL5
      Conserved Domains (6) summary
      cd00060
      Location:514 → 618
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd01233
      Location:1666 → 1768
      PH_KIFIA_KIFIB; KIFIA and KIFIB protein pleckstrin homology (PH) domain
      cd01365
      Location:4 → 361
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam12423
      Location:827 → 874
      KIF1B; Kinesin protein 1B
      pfam12473
      Location:1244 → 1391
      DUF3694; Kinesin protein
      pfam16183
      Location:358 → 537
      Kinesin_assoc; Kinesin-associated

    8. XM_031902559.1 → XP_031758419.1  kinesin-like protein KIF1A isoform X9

      UniProtKB/TrEMBL
      A0A6I8PVH2, A0A8J1JKL9
      Conserved Domains (6) summary
      cd00060
      Location:514 → 618
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd01233
      Location:1635 → 1737
      PH_KIFIA_KIFIB; KIFIA and KIFIB protein pleckstrin homology (PH) domain
      cd01365
      Location:4 → 361
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam12423
      Location:827 → 873
      KIF1B; Kinesin protein 1B
      pfam12473
      Location:1168 → 1332
      DUF3694; Kinesin protein
      pfam16183
      Location:358 → 537
      Kinesin_assoc; Kinesin-associated

    9. XM_031902555.1 → XP_031758415.1  kinesin-like protein KIF1A isoform X5

      UniProtKB/TrEMBL
      A0A6I8PZM4, A0A8J1JN09
      Conserved Domains (6) summary
      cd00060
      Location:492 → 596
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd01233
      Location:1689 → 1791
      PH_KIFIA_KIFIB; KIFIA and KIFIB protein pleckstrin homology (PH) domain
      cd01365
      Location:4 → 361
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam12423
      Location:805 → 852
      KIF1B; Kinesin protein 1B
      pfam12473
      Location:1222 → 1386
      DUF3694; Kinesin protein
      pfam16183
      Location:358 → 515
      Kinesin_assoc; Kinesin-associated

    10. XM_018094455.2 → XP_017949944.1  kinesin-like protein KIF1A isoform X13

      UniProtKB/TrEMBL
      A0A6I8R3F8, A0A8J0T3B2

    11. XM_031902560.1 → XP_031758420.1  kinesin-like protein KIF1A isoform X10

      UniProtKB/TrEMBL
      A0A6I8PZM4, A0A8J1JN14
      Conserved Domains (6) summary
      cd00060
      Location:492 → 596
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd01233
      Location:1613 → 1715
      PH_KIFIA_KIFIB; KIFIA and KIFIB protein pleckstrin homology (PH) domain
      cd01365
      Location:4 → 361
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam12423
      Location:805 → 851
      KIF1B; Kinesin protein 1B
      pfam12473
      Location:1146 → 1310
      DUF3694; Kinesin protein
      pfam16183
      Location:358 → 515
      Kinesin_assoc; Kinesin-associated

    12. XM_012971268.3 → XP_012826722.1  kinesin-like protein KIF1A isoform X11

      UniProtKB/TrEMBL
      A0A6I8PZM4, A0A8J0SPC4
      Related
      ENSXETP00000065873.2, ENSXETT00000090289.2
      Conserved Domains (7) summary
      cd00060
      Location:492 → 596
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd01233
      Location:1577 → 1679
      PH_KIFIA_KIFIB; KIFIA and KIFIB protein pleckstrin homology (PH) domain
      cd01365
      Location:4 → 361
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam12423
      Location:805 → 851
      KIF1B; Kinesin protein 1B
      pfam12473
      Location:1146 → 1302
      DUF3694; Kinesin protein
      pfam16183
      Location:358 → 515
      Kinesin_assoc; Kinesin-associated
      pfam11180
      Location:622 → 680
      DUF2968; Protein of unknown function (DUF2968)

    13. XM_012971269.3 → XP_012826723.1  kinesin-like protein KIF1A isoform X12

      UniProtKB/TrEMBL
      A0A6I8R3F8, A0A8J0SYV6
      Related
      ENSXETP00000080311.2, ENSXETT00000101234.2
      Conserved Domains (7) summary
      cd00060
      Location:492 → 596
      FHA; Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins ...
      cd01233
      Location:1568 → 1670
      PH_KIFIA_KIFIB; KIFIA and KIFIB protein pleckstrin homology (PH) domain
      cd01365
      Location:4 → 361
      KISc_KIF1A_KIF1B; Kinesin motor domain, KIF1_like proteins
      pfam12423
      Location:805 → 851
      KIF1B; Kinesin protein 1B
      pfam12473
      Location:1146 → 1293
      DUF3694; Kinesin protein
      pfam16183
      Location:358 → 515
      Kinesin_assoc; Kinesin-associated
      pfam11180
      Location:622 → 680
      DUF2968; Protein of unknown function (DUF2968)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.