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    Srp54c signal recognition particle 54C [ Mus musculus (house mouse) ]

    Gene ID: 100101806, updated on 25-Sep-2017

    Summary

    Official Symbol
    Srp54cprovided by MGI
    Official Full Name
    signal recognition particle 54Cprovided by MGI
    Primary source
    MGI:MGI:3714359
    See related
    Ensembl:ENSMUSG00000079108
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    E330029E12Rik
    Expression
    Ubiquitous expression in placenta adult (RPKM 30.5), bladder adult (RPKM 26.6) and 28 other tissues See more

    Genomic context

    See Srp54c in Genome Data Viewer
    Location:
    12; 12 C1
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 12 NC_000078.6 (55230129..55278984)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (56331465..56364007)

    Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene signal recognition particle 54B Neighboring gene RIKEN cDNA 1700047I17 gene 2 Neighboring gene predicted gene 2446 Neighboring gene protein phosphatase 2, regulatory subunit B'', gamma Neighboring gene RIKEN cDNA 1110008L16 gene Neighboring gene ribosomal protein L18A, pseudogene 1 Neighboring gene proteasome (prosome, macropain) subunit, alpha type 6

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Pathways from BioSystems

    General gene information

    Markers

    Clone Names

    • MGC6231

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    signal recognition particle 54C

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001100110.1NP_001093580.1  signal recognition particle 54C

      Status: VALIDATED

      Source sequence(s)
      AC174776
      Consensus CDS
      CCDS49067.1
      UniProtKB/TrEMBL
      E9PXC0
      Related
      ENSMUSP00000151681.1, ENSMUST00000218879.1
      Conserved Domains (4) summary
      TIGR01425
      Location:2430
      SRP54_euk; signal recognition particle protein SRP54
      pfam00448
      Location:102294
      SRP54; SRP54-type protein, GTPase domain
      pfam02881
      Location:683
      SRP54_N; SRP54-type protein, helical bundle domain
      pfam02978
      Location:326429
      SRP_SPB; Signal peptide binding domain

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000078.6 Reference GRCm38.p4 C57BL/6J

      Range
      55230129..55278984
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006515318.3XP_006515381.1  signal recognition particle 54C isoform X1

      Conserved Domains (4) summary
      TIGR01425
      Location:2430
      SRP54_euk; signal recognition particle protein SRP54
      pfam00448
      Location:102294
      SRP54; SRP54-type protein, GTPase domain
      pfam02881
      Location:683
      SRP54_N; SRP54-type protein, helical bundle domain
      pfam02978
      Location:326429
      SRP_SPB; Signal peptide binding domain
    2. XM_011243971.2XP_011242273.1  signal recognition particle 54C isoform X2

      Conserved Domains (2) summary
      pfam00448
      Location:4155
      SRP54; SRP54-type protein, GTPase domain
      pfam02978
      Location:187290
      SRP_SPB; Signal peptide binding domain
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