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    ITGB1 integrin subunit beta 1 [ Equus caballus (horse) ]

    Gene ID: 100055024, updated on 7-Oct-2019

    Summary

    Official Symbol
    ITGB1provided by VGNC
    Official Full Name
    integrin subunit beta 1provided by VGNC
    Primary source
    VGNC:VGNC:19175
    See related
    Ensembl:ENSECAG00000022498
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Also known as
    CD29
    Orthologs

    Genomic context

    See ITGB1 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    103 current EquCab3.0 (GCF_002863925.1) 29 NC_009172.3 (6049658..6095732)
    102 previous assembly EquCab2.0 (GCF_000002305.2) 29 NC_009172.2 (5036908..5077786)

    Chromosome 29 - NC_009172.3Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102149425 Neighboring gene uncharacterized LOC102149498 Neighboring gene coiled-coil domain containing 7 Neighboring gene enhancer of polycomb homolog 1

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    integrin beta-1
    Names
    integrin, beta 1 (fibronectin receptor, beta polypeptide, antigen CD29 includes MDF2, MSK12)

    NCBI Reference Sequences (RefSeq)

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001301217.1NP_001288146.1  integrin beta-1 precursor

      Status: INFERRED

      Source sequence(s)
      DN508960, JL640389, PJAA01000030
      Related
      ENSECAP00000046507.1, ENSECAT00000034042.2
      Conserved Domains (3) summary
      pfam00362
      Location:41471
      Integrin_beta; Integrin, beta chain
      pfam07965
      Location:647734
      Integrin_B_tail; Integrin beta tail domain
      pfam08725
      Location:764803
      Integrin_b_cyt; Integrin beta cytoplasmic domain

    RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009172.3 Reference EquCab3.0 Primary Assembly

      Range
      6049658..6095732
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023631884.1XP_023487652.1  integrin beta-1 isoform X1

      Conserved Domains (4) summary
      smart00187
      Location:34464
      INB; Integrin beta subunits (N-terminal portion of extracellular region)
      pfam07974
      Location:602630
      EGF_2; EGF-like domain
      pfam07965
      Location:640727
      Integrin_B_tail; Integrin beta tail domain
      pfam08725
      Location:757796
      Integrin_b_cyt; Integrin beta cytoplasmic domain
    2. XM_003364340.4XP_003364388.3  integrin beta-1 isoform X1

      Conserved Domains (4) summary
      smart00187
      Location:34464
      INB; Integrin beta subunits (N-terminal portion of extracellular region)
      pfam07974
      Location:602630
      EGF_2; EGF-like domain
      pfam07965
      Location:640727
      Integrin_B_tail; Integrin beta tail domain
      pfam08725
      Location:757796
      Integrin_b_cyt; Integrin beta cytoplasmic domain
    3. XM_005606848.3XP_005606905.2  integrin beta-1 isoform X2

      Related
      ENSECAP00000020201.2, ENSECAT00000024324.2
      Conserved Domains (4) summary
      smart00187
      Location:34464
      INB; Integrin beta subunits (N-terminal portion of extracellular region)
      pfam07974
      Location:602630
      EGF_2; EGF-like domain
      pfam07965
      Location:640727
      Integrin_B_tail; Integrin beta tail domain
      pfam08725
      Location:757795
      Integrin_b_cyt; Integrin beta cytoplasmic domain
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