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Taf13 TATA-box binding protein associated factor 13 [ Mus musculus (house mouse) ]

Gene ID: 99730, updated on 8-Nov-2020

Summary

Official Symbol
Taf13provided by MGI
Official Full Name
TATA-box binding protein associated factor 13provided by MGI
Primary source
MGI:MGI:1913500
See related
Ensembl:ENSMUSG00000048100
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
TAFII18; AI847295; 1810004N01Rik; 2010309N11Rik
Expression
Broad expression in CNS E11.5 (RPKM 19.4), bladder adult (RPKM 12.3) and 21 other tissues See more
Orthologs

Genomic context

See Taf13 in Genome Data Viewer
Location:
3; 3 F3
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (108479015..108489384)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (108571699..108582068)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 3 NC_000069.5 (108374617..108384986)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene transmembrane protein 167B Neighboring gene small Cajal body-specific RNA 2 Neighboring gene WD repeat domain 47 Neighboring gene 40S ribosomal protein S23 pseudogene Neighboring gene chloride channel CLIC-like 1 Neighboring gene G-protein signalling modulator 2 (AGS3-like, C. elegans)

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IDA
Inferred from Direct Assay
more info
PubMed 
TBP-class protein binding ISO
Inferred from Sequence Orthology
more info
 
protein C-terminus binding ISO
Inferred from Sequence Orthology
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
protein heterodimerization activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
nucleolus ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
transcription factor TFIID complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transcription factor TFIID complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
transcription initiation factor TFIID subunit 13
Names
TAF(II)18
TAF13 RNA polymerase II, TATA box binding protein (TBP)-associated factor
TAF13 RNA polymerase II, TATA box-binding protein-associated factor
TAFII-18
TBP-associated factor, RNA polymerase II, K, 18kD
transcription initiation factor TFIID 18 kDa subunit

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025444.2NP_079720.1  transcription initiation factor TFIID subunit 13

    See identical proteins and their annotated locations for NP_079720.1

    Status: PROVISIONAL

    Source sequence(s)
    AK007339
    Consensus CDS
    CCDS17764.1
    UniProtKB/Swiss-Prot
    P61216
    Related
    ENSMUSP00000121346.1, ENSMUST00000143054.1
    Conserved Domains (1) summary
    cd07978
    Location:29118
    TAF13; The TATA Binding Protein (TBP) Associated Factor 13 (TAF13) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    108479015..108489384
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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