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Olfml3 olfactomedin-like 3 [ Mus musculus (house mouse) ]

Gene ID: 99543, updated on 9-Dec-2024

Summary

Official Symbol
Olfml3provided by MGI
Official Full Name
olfactomedin-like 3provided by MGI
Primary source
MGI:MGI:1914877
See related
Ensembl:ENSMUSG00000027848 AllianceGenome:MGI:1914877
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ONT3; mONT3; HNOEL-iso; 2810002E22Rik
Summary
Predicted to be involved in signal transduction. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including alimentary system; genitourinary system; lateral plate mesoderm; neural ectoderm; and sensory organ. Orthologous to human OLFML3 (olfactomedin like 3). [provided by Alliance of Genome Resources, Dec 2024]
Expression
Broad expression in lung adult (RPKM 72.8), limb E14.5 (RPKM 41.8) and 22 other tissues See more
Orthologs
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Genomic context

See Olfml3 in Genome Data Viewer
Location:
3 F2.2; 3 45.52 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 3 NC_000069.7 (103642710..103645317, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 3 NC_000069.6 (103735394..103738001, complement)

Chromosome 3 - NC_000069.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 57719 Neighboring gene uncharacterized LOC108168889 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:103542020-103542203 Neighboring gene STARR-positive B cell enhancer ABC_E6093 Neighboring gene homeodomain interacting protein kinase 1 Neighboring gene STARR-seq mESC enhancer starr_08602 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:103577942-103578125 Neighboring gene CapStarr-seq enhancer MGSCv37_chr3:103581922-103582188 Neighboring gene predicted gene 15886 Neighboring gene DNA cross-link repair 1B Neighboring gene predicted gene 15471

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Targeted (2)  1 citation

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
olfactomedin-like protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_133859.2NP_598620.2  olfactomedin-like protein 3 precursor

    See identical proteins and their annotated locations for NP_598620.2

    Status: VALIDATED

    Source sequence(s)
    AK131879, BY059553
    Consensus CDS
    CCDS17693.1
    UniProtKB/Swiss-Prot
    A9R9W9, Q3V2F2, Q8BK62, Q8C1T0, Q99K37
    UniProtKB/TrEMBL
    A0A0R4J086
    Related
    ENSMUSP00000029440.9, ENSMUST00000029440.10
    Conserved Domains (2) summary
    pfam02191
    Location:139395
    OLF; Olfactomedin-like domain
    pfam15188
    Location:37101
    CCDC-167; Coiled-coil domain-containing protein 167

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000069.7 Reference GRCm39 C57BL/6J

    Range
    103642710..103645317 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)