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SLC35E2A solute carrier family 35 member E2A [ Homo sapiens (human) ]

Gene ID: 9906, updated on 12-May-2019

Summary

Official Symbol
SLC35E2Aprovided by HGNC
Official Full Name
solute carrier family 35 member E2Aprovided by HGNC
Primary source
HGNC:HGNC:20863
See related
Ensembl:ENSG00000215790
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SLC35E2
Expression
Ubiquitous expression in brain (RPKM 10.4), ovary (RPKM 10.3) and 25 other tissues See more
Orthologs

Genomic context

See SLC35E2A in Genome Data Viewer
Location:
1p36.33
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 1 NC_000001.11 (1724838..1745999, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (1656277..1677438, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 23A (pseudogene) Neighboring gene cyclin dependent kinase 11A Neighboring gene ribosomal protein S7 pseudogene Neighboring gene uncharacterized LOC112268218 Neighboring gene NAD kinase Neighboring gene G protein subunit beta 1 Neighboring gene collagen alpha-2(VIII) chain

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: CDK11A

Homology

Clone Names

  • FLJ34996, FLJ44537, KIAA0447, MGC104754, MGC117254, MGC126715, MGC138494, DKFZp686M0869

Gene Ontology Provided by GOA

Function Evidence Code Pubs
antiporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
pyrimidine nucleotide-sugar transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
pyrimidine nucleotide-sugar transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
solute carrier family 35 member E2A
Names
solute carrier family 35 member E2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199787.1NP_001186716.1  solute carrier family 35 member E2A isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (2) has a shorter and distinct C-terminus compared to isoform a.
    Source sequence(s)
    AL031282, AL049665, BC062371, DB461679
    Consensus CDS
    CCDS55560.1
    UniProtKB/Swiss-Prot
    P0CK97
    Related
    ENSP00000347614.2, ENST00000355439.7
    Conserved Domains (1) summary
    pfam03151
    Location:73196
    TPT; Triose-phosphate Transporter family
  2. NM_182838.2NP_878258.1  solute carrier family 35 member E2A isoform 1

    See identical proteins and their annotated locations for NP_878258.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AI802363, AL031282, AL049665, DB461679
    Consensus CDS
    CCDS33.1
    UniProtKB/Swiss-Prot
    P0CK97
    Related
    ENSP00000495949.1, ENST00000643905.1
    Conserved Domains (1) summary
    cl26744
    Location:73196
    TPT; Triose-phosphate Transporter family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p12 Primary Assembly

    Range
    1724838..1745999 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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