U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Slamf9 SLAM family member 9 [ Mus musculus (house mouse) ]

Gene ID: 98365, updated on 26-Sep-2022

Summary

Official Symbol
Slamf9provided by MGI
Official Full Name
SLAM family member 9provided by MGI
Primary source
MGI:MGI:1923692
See related
Ensembl:ENSMUSG00000026548 AllianceGenome:MGI:1923692
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Cd2f10; SF2001; CD2F-10; CD84-H1; 2310026I04Rik
Summary
Acts upstream of or within defense response to bacterium; plasmacytoid dendritic cell chemotaxis; and plasmacytoid dendritic cell differentiation. Located in cell surface. Is expressed in heart ventricle; lung; and pituitary gland. Orthologous to human SLAMF9 (SLAM family member 9). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in kidney adult (RPKM 7.7), mammary gland adult (RPKM 7.1) and 20 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Slamf9 in Genome Data Viewer
Location:
1; 1 H3
Exon count:
4
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (172302927..172305976)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (172458569..172478421)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene phosphatidylinositol glycan anchor biosynthesis, class M Neighboring gene predicted gene, 35522 Neighboring gene ribosomal protein SA pseudogene Neighboring gene immunoglobulin superfamily, member 9 Neighboring gene transgelin 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in cell surface IDA
Inferred from Direct Assay
more info
PubMed 
located_in cell surface ISO
Inferred from Sequence Orthology
more info
PubMed 
is_active_in external side of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
SLAM family member 9
Names
CD2 antigen family, member 10

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_029612.4NP_083888.3  SLAM family member 9 precursor

    See identical proteins and their annotated locations for NP_083888.3

    Status: VALIDATED

    Source sequence(s)
    AI120415, AK009505, BE447476
    Consensus CDS
    CCDS15514.1
    UniProtKB/Swiss-Prot
    Q9D780
    UniProtKB/TrEMBL
    A0A0R4J072
    Related
    ENSMUSP00000027830.5, ENSMUST00000027830.5
    Conserved Domains (1) summary
    cd16842
    Location:30128
    Ig_SLAM-CD84_like_N; N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    172302927..172305976
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)