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OT_ostta06g03930 Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily [ Ostreococcus tauri ]

Gene ID: 9836424, updated on 16-Nov-2023

Summary

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Gene symbol
OT_ostta06g03930
Gene description
Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily
Locus tag
OT_ostta06g03930
Gene type
protein coding
RNA name
Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily
RefSeq status
PROVISIONAL
Organism
Ostreococcus tauri (strain: RCC4221)
Lineage
Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Old locus tag
Ot06g04190
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Genomic context

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Location:
chromosome: 6
Exon count:
1
Sequence:
Chromosome: 6; NC_014431.2 (673416..675338)

Chromosome 6 - NC_014431.2Genomic Context describing neighboring genes Neighboring gene Putative 5-3 exonuclease Neighboring gene unnamed product Neighboring gene HAT dimerisation domain, C-terminal Neighboring gene SAP domain

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_014431.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. An improved genome of the model marine alga Ostreococcus tauri unfolds by assessing Illumina de novo assemblies. Blanc-Mathieu R, et al. BMC Genomics, 2014 Dec 13. PMID 25494611, Free PMC Article
  2. Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features. Derelle E, et al. Proc Natl Acad Sci U S A, 2006 Aug 1. PMID 16868079, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in 2-oxobutyrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in serine family amino acid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_014431.2 Reference assembly

    Range
    673416..675338
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003079984.2 → XP_003080032.2  Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily [Ostreococcus tauri]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A090M2L3, A0A1Y5IMW4
    Conserved Domains (1) summary
    cl00342
    Location:3 → 477
    Trp-synth-beta_II; Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan ...
Nucleotide Protein
Heading Accession and Version

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