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rbsD D-ribose pyranase [ Dickeya dadantii 3937 ]

Gene ID: 9731392, updated on 6-Oct-2023

Summary

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Gene symbol
rbsD
Gene description
D-ribose pyranase
Locus tag
DDA3937_RS00030
Gene type
protein coding
Organism
Dickeya dadantii 3937 (strain: 3937)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Dickeya
Old locus tag
Dda3937_02355
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Genomic context

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Sequence:
NC_014500.1 (6696..7115)

NC_014500.1Genomic Context describing neighboring genes Neighboring gene ATPase RavA Neighboring gene low affinity potassium transporter Kup Neighboring gene ribose ABC transporter ATP-binding protein RbsA Neighboring gene ribose ABC transporter permease

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_014500.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Crystallization and preliminary X-ray crystallographic analysis of Escherichia coli RbsD, a component of the ribose-transport system with unknown biochemical function. Kim MS, et al. Acta Crystallogr D Biol Crystallogr, 2001 May. PMID 11320319
  2. Crystal structures of RbsD leading to the identification of cytoplasmic sugar-binding proteins with a novel folding architecture. Kim MS, et al. J Biol Chem, 2003 Jul 25. PMID 12738765
  3. NMR application probes a novel and ubiquitous family of enzymes that alter monosaccharide configuration. Ryu KS, et al. J Biol Chem, 2004 Jun 11. PMID 15060078
  4. Structural insights into the monosaccharide specificity of Escherichia coli rhamnose mutarotase. Ryu KS, et al. J Mol Biol, 2005 May 27. PMID 15876375
  5. Genome sequence of the plant-pathogenic bacterium Dickeya dadantii 3937. Glasner JD, et al. J Bacteriol, 2011 Apr. PMID 21217001, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
D-ribose pyranase
WP_013315718.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_014500.1 Reference assembly

    Range
    6696..7115
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_013315718.1 MULTISPECIES: D-ribose pyranase [Dickeya]

    See identical proteins and their annotated locations for WP_013315718.1

    UniProtKB/TrEMBL
    A0A2K8QSG5, A0A3N0G760, E0SDT7
    Conserved Domains (1) summary
    PRK11797
    Location:1 → 139
    PRK11797; D-ribose pyranase; Provisional
Nucleotide Protein
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