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C77080 expressed sequence C77080 [ Mus musculus (house mouse) ]

Gene ID: 97130, updated on 8-Jan-2023

Summary

Official Symbol
C77080provided by MGI
Official Full Name
expressed sequence C77080provided by MGI
Primary source
MGI:MGI:2140651
See related
Ensembl:ENSMUSG00000050390 AllianceGenome:MGI:2140651
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
mKIAA1522
Summary
Predicted to be involved in cell differentiation. Orthologous to human KIAA1522 (KIAA1522). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in colon adult (RPKM 89.1), duodenum adult (RPKM 85.4) and 15 other tissues See more
Orthologs
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Genomic context

See C77080 in Genome Data Viewer
Location:
4; 4 D2.2
Exon count:
10
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (129113371..129155197, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (129219578..129261404, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene S100P binding protein Neighboring gene tyrosyl-tRNA synthetase Neighboring gene predicted gene 12976 Neighboring gene syncoilin Neighboring gene retinoblastoma binding protein 4, chromatin remodeling factor Neighboring gene zinc finger and BTB domain containing 8 opposite strand

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in cell differentiation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein KIAA1522

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033189.4NP_001028361.1  uncharacterized protein KIAA1522 isoform a

    See identical proteins and their annotated locations for NP_001028361.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
    Source sequence(s)
    AL606977
    Consensus CDS
    CCDS18686.1
    UniProtKB/Swiss-Prot
    A2A7S8
    Related
    ENSMUSP00000062395.6, ENSMUST00000052602.6
    Conserved Domains (1) summary
    PRK14951
    Location:8471006
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
  2. NM_001285865.2NP_001272794.1  uncharacterized protein KIAA1522 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains an alternate 5' exon and it thus differs in the 5' UTR and 5' coding region, compared to variant 1. The encoded isoform (b) has a distinct and shorter N-terminus, compared to isoform a.
    Source sequence(s)
    AL606977
    Consensus CDS
    CCDS71475.1
    UniProtKB/Swiss-Prot
    A2A7S8
    Related
    ENSMUSP00000095483.4, ENSMUST00000097873.10
    Conserved Domains (1) summary
    PRK14951
    Location:802961
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
  3. NM_001285866.2NP_001272795.1  uncharacterized protein KIAA1522 isoform c

    See identical proteins and their annotated locations for NP_001272795.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains an alternate 5' exon and it thus differs in the 5' UTR and 5' coding region, compared to variant 1. The encoded isoform (c) has a distinct and shorter N-terminus, compared to isoform a.
    Source sequence(s)
    AL606977
    Consensus CDS
    CCDS71474.1
    UniProtKB/Swiss-Prot
    A2A7S8, Q8K0K8
    Related
    ENSMUSP00000101666.2, ENSMUST00000106051.8
    Conserved Domains (1) summary
    PRK14951
    Location:790949
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional
  4. NM_001285867.2NP_001272796.1  uncharacterized protein KIAA1522 isoform d

    See identical proteins and their annotated locations for NP_001272796.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) contains an alternate 5' exon and it thus differs in the 5' UTR and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (d) is shorter at the N-terminus, compared to isoform a.
    Source sequence(s)
    AL606977, AL607123
    UniProtKB/Swiss-Prot
    A2A7S8
    Conserved Domains (1) summary
    PRK14951
    Location:677836
    PRK14951; DNA polymerase III subunits gamma and tau; Provisional

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    129113371..129155197 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)