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GARRE1 granule associated Rac and RHOG effector 1 [ Homo sapiens (human) ]

Gene ID: 9710, updated on 23-Nov-2021

Summary

Official Symbol
GARRE1provided by HGNC
Official Full Name
granule associated Rac and RHOG effector 1provided by HGNC
Primary source
HGNC:HGNC:29016
See related
Ensembl:ENSG00000166398 MIM:619335
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
KIAA0355
Expression
Ubiquitous expression in placenta (RPKM 14.1), spleen (RPKM 10.3) and 25 other tissues See more
Orthologs
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Genomic context

See GARRE1 in Genome Data Viewer
Location:
19q13.11
Exon count:
14
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (34254554..34355566)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (34745459..34846471)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene coiled-coil-helix-coiled-coil-helix domain containing 2 pseudogene 3 Neighboring gene LSM14A mRNA processing body assembly factor Neighboring gene ribosomal protein L29 pseudogene 33 Neighboring gene Sharpr-MPRA regulatory region 14193 Neighboring gene glucose-6-phosphate isomerase Neighboring gene programmed cell death 2 like Neighboring gene RNA, 7SL, cytoplasmic 154, pseudogene Neighboring gene ubiquitin like modifier activating enzyme 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

Associated conditions

Description Tests
A genome-wide association study of amygdala activation in youths with and without bipolar disorder.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables CCR4-NOT complex binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables CCR4-NOT complex binding IDA
Inferred from Direct Assay
more info
PubMed 
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
enables small GTPase binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
involved_in Rac protein signal transduction IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in Rac protein signal transduction IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
located_in P-body IDA
Inferred from Direct Assay
more info
PubMed 
located_in cytosol TAS
Traceable Author Statement
more info
 

General protein information

Preferred Names
granule associated Rac and RHOG effector protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_014686.5NP_055501.2  granule associated Rac and RHOG effector protein 1

    See identical proteins and their annotated locations for NP_055501.2

    Status: VALIDATED

    Source sequence(s)
    AB002353, AC010504, AU100313, BC104761
    Consensus CDS
    CCDS12436.1
    UniProtKB/Swiss-Prot
    O15063
    Related
    ENSP00000299505.4, ENST00000299505.8
    Conserved Domains (1) summary
    pfam15923
    Location:59187
    DUF4745; Domain of unknown function (DUF4745)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    34254554..34355566
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NT_187619.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    704..4760
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 ALT_REF_LOCI_1

Genomic

  1. NW_003315963.1 Reference GRCh38.p13 ALT_REF_LOCI_1

    Range
    109468..155864
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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