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Eint_101290 Rrp4-like RNA-binding protein [ Encephalitozoon intestinalis ATCC 50506 ]

Gene ID: 9699520, updated on 11-Apr-2024

Summary

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Gene symbol
Eint_101290
Gene description
Rrp4-like RNA-binding protein
Locus tag
Eint_101290
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Encephalitozoon intestinalis ATCC 50506 (strain: ATCC 50506)
Lineage
Eukaryota; Fungi; Fungi incertae sedis; Microsporidia; Unikaryonidae; Encephalitozoon
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Genomic context

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See Eint_101290 in Genome Data Viewer
Location:
chromosome: X
Exon count:
1
Sequence:
Chromosome: X; NC_014424.1 (168756..169427, complement)

Chromosome X - NC_014424.1Genomic Context describing neighboring genes Neighboring gene SNF2 DNA/RNA helicase Neighboring gene Ercc1-like DNA excision repair protein Neighboring gene putative beta-lactamase fold-containing exonuclease Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_014424.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The complete sequence of the smallest known nuclear genome from the microsporidian Encephalitozoon intestinalis. Corradi N, et al. Nat Commun, 2010 Sep 21. PMID 20865802, Free PMC Article
  2. Gain and loss of multiple functionally related, horizontally transferred genes in the reduced genomes of two microsporidian parasites. Pombert JF, et al. Proc Natl Acad Sci U S A, 2012 Jul 31. PMID 22802648, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in CUT catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in U4 snRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in poly(A)-dependent snoRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytoplasmic exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Rrp4-like RNA-binding protein
XP_003073814.1
  • similar to ECU10_1340

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_014424.1 Reference assembly

    Range
    168756..169427 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003073768.2 → XP_003073814.1  Rrp4-like RNA-binding protein [Encephalitozoon intestinalis ATCC 50506]

    See identical proteins and their annotated locations for XP_003073814.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    E0S9R9
    Conserved Domains (3) summary
    COG1097
    Location:1 → 221
    Rrp4; Exosome complex RNA-binding protein Rrp4, contains S1 and KH domains [Translation, ribosomal structure and biogenesis]
    cd05789
    Location:54 → 145
    S1_Rrp4; S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in ...
    pfam14382
    Location:4 → 41
    ECR1_N; Exosome complex exonuclease RRP4 N-terminal region
Nucleotide Protein
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