NEW
Try the new Transcript table
These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_008937.1 RefSeqGene
- Range
-
5302..98533
- Download
- GenBank, FASTA, Sequence Viewer (Graphics), LRG_815
mRNA and Protein(s)
-
NM_000610.4 → NP_000601.3 CD44 antigen isoform 1 precursor
See identical proteins and their annotated locations for NP_000601.3
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) represents the longest transcript. It encodes the longest isoform (1).
- Source sequence(s)
-
AK127622, AL832642, AY101192, BC004372, BF828674, BF872530, CD721908
- Consensus CDS
-
CCDS7897.1
- UniProtKB/Swiss-Prot
- P16070, Q9UJ36
- Related
- ENSP00000398632.2, ENST00000428726.8
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
NM_001001389.2 → NP_001001389.1 CD44 antigen isoform 2 precursor
See identical proteins and their annotated locations for NP_001001389.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) lacks an in-frame coding exon compared to variant 1. The resulting isoform (2) lacks an internal region, as compared to isoform 1.
- Source sequence(s)
-
AK127622, AL832642, AY101192, BC004372, BF828674, CD721908
- Consensus CDS
-
CCDS31455.1
- UniProtKB/Swiss-Prot
-
P16070
- Related
- ENSP00000389830.2, ENST00000415148.6
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
NM_001001390.2 → NP_001001390.1 CD44 antigen isoform 3 precursor
See identical proteins and their annotated locations for NP_001001390.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3), also known as CD44R, lacks multiple coding-exons compared to variant 1. The translation remains in-frame. The resulting isoform (3) lacks an internal segment, as compared to isoform 1.
- Source sequence(s)
-
AK127622, AL832642, AY101192, BG946113, CD721908
- Consensus CDS
-
CCDS31456.1
- UniProtKB/Swiss-Prot
-
P16070
- Related
- ENSP00000392331.2, ENST00000433892.6
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
NM_001001391.2 → NP_001001391.1 CD44 antigen isoform 4 precursor
See identical proteins and their annotated locations for NP_001001391.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) lacks multiple coding-exons compared to variant 1. The translation remains in-frame. The resulting isoform (4) lacks an internal segment, as compared to isoform 1.
- Source sequence(s)
-
AK127622, AL832642, AY101192, CD721908
- Consensus CDS
-
CCDS31457.1
- UniProtKB/Swiss-Prot
-
P16070
- Related
- ENSP00000263398.6, ENST00000263398.11
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
NM_001001392.2 → NP_001001392.1 CD44 antigen isoform 5 precursor
See identical proteins and their annotated locations for NP_001001392.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) lacks multiple coding-exons compared to variant 1. The translation frame is changed. The resulting isoform (5), also known as CD44 isoform RC, has a distinct and shorter C-terminus, as compared to isoform 1.
- Source sequence(s)
-
AK127622, AL832642, AY101192, CD721908, W47313
- Consensus CDS
-
CCDS31458.1
- UniProtKB/Swiss-Prot
-
P16070
- Related
- ENSP00000278386.6, ENST00000278386.10
- Conserved Domains (1) summary
-
- cl02612
Location:26 → 78
- Link_Domain; The link domain is a hyaluronan (HA)-binding domain. It functions to mediate adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It is found in the CD44 receptor and in human TSG-6. TSG-6 is the protein product of the tumor ...
-
NM_001202555.2 → NP_001189484.1 CD44 antigen isoform 6 precursor
See identical proteins and their annotated locations for NP_001189484.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (6), also known as CD44R2, lacks multiple coding-exons compared to variant 1. The translation remains in-frame. The resulting isoform (6) lacks an internal segment, as compared to isoform 1.
- Source sequence(s)
-
AL133330, AL832642, EF581837
- Consensus CDS
-
CCDS55754.1
- UniProtKB/Swiss-Prot
-
P16070
- Related
- ENSP00000404447.2, ENST00000434472.6
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
NM_001202556.2 → NP_001189485.1 CD44 antigen isoform 7 precursor
See identical proteins and their annotated locations for NP_001189485.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (7) lacks multiple coding-exons compared to variant 1. The translation remains in-frame. The resulting isoform (7) lacks an internal segment, as compared to isoform 1.
- Source sequence(s)
-
AL133330, AL832642, FJ216964
- Consensus CDS
-
CCDS55755.1
- UniProtKB/Swiss-Prot
-
P16070
- Related
- ENSP00000309732.6, ENST00000352818.8
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
NM_001202557.2 → NP_001189486.1 CD44 antigen isoform 8 precursor
See identical proteins and their annotated locations for NP_001189486.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (8), also known as Hermes, lacks multiple in-frame coding-exons and differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (8) lacks an internal segment and has a shorter and distinct C-terminus, as compared to isoform 1.
- Source sequence(s)
-
AL133330, AL832642, M25078
- UniProtKB/Swiss-Prot
-
P16070
- Related
- ENSP00000398099.2, ENST00000442151.6
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000011.10 Reference GRCh38.p14 Primary Assembly
- Range
-
35139171..35232402
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_005253231.4 → XP_005253288.1 CD44 antigen isoform X1
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
XM_011520482.3 → XP_011518784.1 CD44 antigen isoform X7
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
XM_005253232.4 → XP_005253289.1 CD44 antigen isoform X2
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
XM_017018583.3 → XP_016874072.1 CD44 antigen isoform X6
-
XM_006718388.3 → XP_006718451.1 CD44 antigen isoform X3
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
XM_005253239.4 → XP_005253296.1 CD44 antigen isoform X15
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
XM_005253235.4 → XP_005253292.1 CD44 antigen isoform X4
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
XM_047427895.1 → XP_047283851.1 CD44 antigen isoform X5
-
XM_047427896.1 → XP_047283852.1 CD44 antigen isoform X10
-
XM_005253240.4 → XP_005253297.1 CD44 antigen isoform X18
See identical proteins and their annotated locations for XP_005253297.1
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
XM_047427902.1 → XP_047283858.1 CD44 antigen isoform X21
-
XM_011520483.3 → XP_011518785.1 CD44 antigen isoform X8
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
XM_047427897.1 → XP_047283853.1 CD44 antigen isoform X12
-
XM_011520484.3 → XP_011518786.1 CD44 antigen isoform X9
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
XM_011520485.3 → XP_011518787.1 CD44 antigen isoform X11
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
XM_005253238.4 → XP_005253295.1 CD44 antigen isoform X13
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
XM_047427900.1 → XP_047283856.1 CD44 antigen isoform X19
-
XM_047427898.1 → XP_047283854.1 CD44 antigen isoform X14
-
XM_047427899.1 → XP_047283855.1 CD44 antigen isoform X17
-
XM_047427901.1 → XP_047283857.1 CD44 antigen isoform X20
-
XM_011520486.3 → XP_011518788.1 CD44 antigen isoform X16
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
XM_011520488.3 → XP_011518790.1 CD44 antigen isoform X23
See identical proteins and their annotated locations for XP_011518790.1
- UniProtKB/Swiss-Prot
-
P16070
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
XM_011520487.4 → XP_011518789.1 CD44 antigen isoform X22
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
XM_047427903.1 → XP_047283859.1 CD44 antigen isoform X24
-
XM_011520489.4 → XP_011518791.1 CD44 antigen isoform X25
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
-
XM_047427904.1 → XP_047283860.1 CD44 antigen isoform X27
-
XM_006718390.5 → XP_006718453.1 CD44 antigen isoform X26
- Conserved Domains (1) summary
-
- cd03516
Location:26 → 170
- Link_domain_CD44_like; This domain is a hyaluronan (HA)-binding domain. It is found in CD44 receptor and mediates adhesive interactions during inflammatory leukocyte homing and tumor metastasis. It also plays an important role in arteriogenesis. The functional HA-binding ...
Alternate T2T-CHM13v2.0
Genomic
-
NC_060935.1 Alternate T2T-CHM13v2.0
- Range
-
35277234..35370499
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)